LOCUS BC036025 4015 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protocadherin 8, mRNA (cDNA clone MGC:33061
IMAGE:5278690), complete cds.
ACCESSION BC036025
VERSION BC036025.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4015)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4015)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 48 Row: h Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6631101.
FEATURES Location/Qualifiers
source 1..4015
/db_xref="H-InvDB:HIT000051589"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33061 IMAGE:5278690"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4015
/gene="PCDH8"
/gene_synonym="ARCADLIN"
/gene_synonym="PAPC"
/db_xref="GeneID:5100"
/db_xref="HGNC:HGNC:8660"
/db_xref="MIM:603580"
CDS 205..3417
/gene="PCDH8"
/gene_synonym="ARCADLIN"
/gene_synonym="PAPC"
/codon_start=1
/product="protocadherin 8"
/protein_id="AAH36025.1"
/db_xref="GeneID:5100"
/db_xref="HGNC:HGNC:8660"
/db_xref="MIM:603580"
/translation="MSPVRRWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGT
VIGTLAEDLHMKVSGDTSFRLMKQFNSSLLRVREGDGQLTVGDAGLDRERLCGQAPQC
VLAFDVVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQIPVEVSEGAAVGTRIPLEVPV
DEDVGANGLQTVRLAEPHSPFRVELQTRADGAQCADLVLLQELDRESQAAYSLELVAQ
DGGRPPRSATAALSVRVLDANDHSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEG
PNGDVVFAFGARTPPEARRLFRLDPRSGRLTLAGPVDYERQDTYELDVRAQDRGPGPR
AATCKVIVRIRDVNDNAPDIAITPLAAPGAPATSPFAAAAAAAALGGADASSPAGAGT
PEAGATSLVPEGAARESLVALVSTSDRDSGANGQVRCALYGHEHFRLQPAYAGSYLVV
TAASLDRERIAEYNLTLVAEDRGAPPLRTVRPYTVRVGDENDNAPLFTRPVYEVSVRE
NNPPGAYLATVAARDRDLGRNGQVTYRLLEAEVGRAGGAVSTYVSVDPATGAIYALRS
FDYETLRQLDVRIQASDGGSPQLSSSALVQVRVLDQNDHAPVLVHPAPANGSLEVAVP
GRTAKDTVVARVQARDADEGANGELAFELQQQEPREAFAIGRRTGEILLTGDLSQEPP
GRVFRALLVISDGGRPPLTTTATVSFVVTAGGGRGPAAPASAGSPERSRPPGSRLGVS
GSVLQWDTPLIVIIVLAGSCTLLLAAIIAIATTCNRRKKEVRKGGALREERPGAAGGG
ASAPGSPEEAARGAGPRPNMFDVLTFPGTGKAPFGCPAADAPPPAVAAAEVPGSEGGS
ATGESACHFEGQQRLRGAHAEPYGASPGFGKEPAPPVAVWKGHSFNTISGREAEKFSG
KDSGKGDSDFNDSDSDISGDALKKDLINHMQSGLWACTAECKILGHSDRCWSPSCSGP
NAHPSPHPPAQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEKVLHRDYDRTV
TLLSPPRPGRLPDLQEIGVPLYQSPPGRYLSPKKGANENV"
BASE COUNT 769 a 1259 c 1268 g 719 t
ORIGIN
1 agcttctgta agagacggag aggcgcagag tgagggcggg tccgcgcgtc ctcagagccc
61 gctggaggct cggagctgct acccgcagac ttctcccgca cagggctcgc aaagagcgtg
121 attccgagag cctgagactg acgcccgacc tggaaaccag agaagacttc cttagccttt
181 cggatcgcac ttgaggctgg aggcatgagt cctgtgaggc gttggggcag cccctgcctt
241 ttccccttgc agctcttcag cctctgctgg gtgctctcag tggcccagag caaaacagtc
301 cgatacagca ccttcgagga ggatgccccc ggcacggtca tcgggaccct ggccgaggac
361 ctgcacatga aagtatcggg tgacacaagc ttccgcctga tgaagcaatt caacagctct
421 ctgctccggg tgcgcgaagg cgacgggcag ctgaccgtcg gggacgccgg cctggaccgc
481 gagcggctgt gtggccaggc cccgcagtgc gtgctggcct tcgatgtggt cagcttctcg
541 caggagcagt tccggctggt gcacgtggag gtagaggtga gggacgtcaa cgaccacgcg
601 ccgcgcttcc ccagggccca gatcccggta gaggtgtccg agggtgcggc agtgggcacg
661 cgcatcccct tggaggtgcc ggtggacgag gacgtgggcg ccaacgggct gcagaccgtg
721 cgcctggccg agccgcacag cccctttcgc gtggagctgc agacgcgagc ggacggcgct
781 cagtgcgcag acctggtgct gctgcaggag ctggaccgcg agagccaggc cgcctacagc
841 ctggagctgg tggcccagga cggcggccgc ccgccgcgct ccgccacggc tgccctcagc
901 gtgcgcgtcc tggatgcgaa tgaccacagc ccggccttcc cgcagggcgc cgtggccgaa
961 gtggagctgg cggaagacgc gcccgtgggc tccctgcttc tcgacctgga cgcagccgac
1021 cccgacgagg gacctaacgg cgacgtggtg ttcgcatttg gcgcccgcac cccgccggag
1081 gcgcgccgcc tctttcggct tgacccgcga tcaggccgcc tcaccctggc cgggcccgtg
1141 gactacgagc gtcaggacac ctacgagctg gacgtgcggg cgcaggaccg cggacccggg
1201 ccccgcgctg ccacctgcaa ggtcatcgtg cgcatccgag acgtcaatga caacgcaccc
1261 gacatcgcca tcaccccgct ggccgcccca ggcgcgccgg caacctcacc cttcgccgct
1321 gccgccgccg ccgctgcact cgggggagcg gacgctagct cgccggcggg agccgggacg
1381 ccggaggctg gtgccacttc gctggtgccg gagggggcgg cgcgcgagag cctggtggcc
1441 ctggtcagca cctcggacag ggactcgggc gccaacgggc aagtgcgctg cgccctctat
1501 gggcacgagc acttccggct gcagccggcc tacgcgggca gctacctggt ggtgaccgcg
1561 gcgtcgctgg accgcgaacg catcgccgag tacaacttga cgctggtggc cgaggatcgc
1621 ggcgcgcccc cgctgcgcac agtgcggccc tacacggtgc gtgtgggcga cgagaacgac
1681 aacgcgccgc tcttcacgcg gccggtctat gaggtgtcgg tgcgcgagaa caacccgcca
1741 ggcgcctacc tggccacggt ggccgcccgc gaccgggacc tgggccgcaa cggccaggtc
1801 acctaccggc tgctggaggc cgaggtgggc cgcgccgggg gcgccgtgtc cacttatgtc
1861 tcggtggacc cagctaccgg agccatctac gcgctgcgca gcttcgacta tgagacgctg
1921 cgccaactcg acgttcgcat ccaagctagc gacggcggct cccctcagct ttccagcagc
1981 gccctagtgc aagtgcgcgt gctggaccag aacgaccatg cgccagtcct ggtgcacccg
2041 gcgccagcca atggctccct agaagtggcg gtgcctgggc gcaccgcaaa ggacacggtt
2101 gtggcccgtg tgcaggcccg ggatgcagac gagggagcca acggggagct ggcgttcgag
2161 ctgcagcagc aggagccgcg cgaagccttc gccatcggcc gccgcacggg ggagatactg
2221 ctcaccggcg acctctcgca ggagccaccc ggtcgcgtgt tcagggcgct cctggtcata
2281 tccgacggcg gccgtccccc gctcaccacc accgcaactg tcagcttcgt ggtaacagca
2341 gggggcgggc gtgggccggc tgcgcctgcc agtgcaggaa gcccggagcg ttcccgcccg
2401 cctggctctc ggctcggggt gtccgggtcg gtgctgcaat gggacacgcc gctgatcgtc
2461 atcatcgtgc tggccgggag ctgcacgctg ctgctggccg ccatcatcgc catcgccacc
2521 acctgcaacc gccgcaagaa ggaggtgcgc aaaggggggg ccctccggga agagcggccc
2581 ggggcggcgg gcggcggagc ctcggctccc ggctccccgg aggaggccgc ccggggagcc
2641 gggcccaggc ccaacatgtt cgacgtgctc accttccctg gcaccggcaa agcgcccttt
2701 ggctgccccg cggcggacgc gcctccgcct gcggtcgccg cggccgaagt gccgggctca
2761 gagggcggca gcgccactgg ggaaagcgcc tgtcacttcg aggggcagca gcggctccgc
2821 ggcgcgcacg ccgagcccta cggtgcctcc ccgggttttg gaaaggagcc ggcgccccct
2881 gtggcggtgt ggaaaggaca ctccttcaac accatttctg gcagagaagc agagaagttc
2941 agcggcaaag acagcggtaa aggggacagt gatttcaacg acagcgattc cgacatcagc
3001 ggggacgctc tgaaaaagga tctcatcaac cacatgcaga gtggactgtg ggcgtgcacc
3061 gctgagtgta agatcctggg ccactctgac cgctgctgga gcccatcctg cagcgggccc
3121 aacgcacatc catcgcctca cccaccagcc cagatgtcaa ccttctgtaa gagcacgtca
3181 ctgcctcggg atcctctgcg cagggacaat tactaccagg cccagctgcc caagacagtg
3241 gggctgcaga gcgtctatga gaaagtactg cacagagact atgacaggac agtcactctg
3301 ctctcccctc cccgtccagg gaggctccca gacctgcagg agattggagt acccctctac
3361 cagtcccctc ctggcaggta cctgtccccg aagaagggag ccaatgaaaa tgtgtaatcc
3421 catgctgcat gtcttcacac atatacaggt cactccgaga agcccctaag ttattgaccg
3481 gtttcagtgt tgtatatata aatatgcaag atgtgcctta caatgaagtt gttggaagct
3541 atttccaatc acattggtac tgtttggtat ttgcaaacaa aaatgtagtt aatgtaattt
3601 ttatgaaatg tgtgcagtat ttaatttttc ttatgctatt gactttgatt tcaattgcgg
3661 cttgccattt tcttagtgtt tttaacctgt acattgtgta atgtaatgtt tgtatataat
3721 gaaattttgt tatattttta tataataaaa gctaaagtgg aagttattgc caaaggaact
3781 gtctgtaaga caaaaaacaa aacatgttgg aattacttaa ttgaaattta tctttcacct
3841 gaaacaacct agtgtttgag aaattttgcc ttgccaagta taacttgtat atcttgactc
3901 tgtggtagat ttcaagttca atgttattta attacatttg gttttccgta aaccgtgtca
3961 cttataagca cagtaataaa agatttgtca tgtgtttgga aaaaaaaaaa aaaaa
//