LOCUS BC035972 2292 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens glypican 3, mRNA (cDNA clone MGC:32604 IMAGE:4603748),
complete cds.
ACCESSION BC035972
VERSION BC035972.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2292)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2292)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: e Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5360213.
FEATURES Location/Qualifiers
source 1..2292
/db_xref="H-InvDB:HIT000051569"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32604 IMAGE:4603748"
/tissue_type="Placenta"
/clone_lib="NIH_MGC_79"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2292
/gene="GPC3"
/gene_synonym="DGSX"
/gene_synonym="SGB"
/gene_synonym="SGBS"
/gene_synonym="SGBS1"
/db_xref="GeneID:2719"
/db_xref="HGNC:HGNC:4451"
/db_xref="MIM:300037"
CDS 146..1888
/gene="GPC3"
/gene_synonym="DGSX"
/gene_synonym="SGB"
/gene_synonym="SGBS"
/gene_synonym="SGBS1"
/codon_start=1
/product="glypican 3"
/protein_id="AAH35972.1"
/db_xref="GeneID:2719"
/db_xref="HGNC:HGNC:4451"
/db_xref="MIM:300037"
/translation="MAGTVRTACLVVAMLLSLDFPGQAQPPPPPPDATCHQVRSFFQR
LQPGLKWVPETPVPGSDLQVCLPKGPTCCSRKMEEKYQLTARLNMEQLLQSASMELKF
LIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVGEFFTDVSLYILGSD
INVDDMVNELFDSLFPVIYTQLMNPGLPDSALDINECLRGARRDLKVFGNFPKLIMTQ
VSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMMVKPCGG
YCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYV
QKNAGKLTTTIGKLCAHSQQRQYRFAYYPEDLFIDKKVLKVAHVEHEETLSSRRRELI
QKLKSFISFYSALPGYICSHSPVAENDTLCWNGQELVERYSQKAARNGMKNQFNLHEL
KMKGPEPVVSQIIDKLKHINQLLRTMSMPKGRVLDKNLDEEGFESGDCGDDEDECIGG
SGDGMIKVKNQLRFLAELAYDLDVDDAPGNSQQATPKDNEISTFHNLGNVHSPLKLLT
SMAISVVCFFFLVH"
BASE COUNT 624 a 540 c 530 g 598 t
ORIGIN
1 aggtagctgc gaggaaactt ttgcagcggc tgggtagcag cacgtctctt gctcctcagg
61 gccactgcca ggcttgccga gtcctgggac tgctctcgct ccggctgcca ctctcccgcg
121 ctctcctagc tccctgcgaa gcaggatggc cgggaccgtg cgcaccgcgt gcttggtggt
181 ggcgatgctg ctcagcttgg acttcccggg acaggcgcag cccccgccgc cgccgccgga
241 cgccacctgt caccaagtcc gctccttctt ccagagactg cagcccggac tcaagtgggt
301 gccagaaact cccgtgccag gatcagattt gcaagtatgt ctccctaagg gcccaacatg
361 ctgctcaaga aagatggaag aaaaatacca actaacagca cgattgaaca tggaacagct
421 gcttcagtct gcaagtatgg agctcaagtt cttaattatt cagaatgctg cggttttcca
481 agaggccttt gaaattgttg ttcgccatgc caagaactac accaatgcca tgttcaagaa
541 caactaccca agcctgactc cacaagcttt tgagtttgtg ggtgaatttt tcacagatgt
601 gtctctctac atcttgggtt ctgacatcaa tgtagatgac atggtcaatg aattgtttga
661 cagcctgttt ccagtcatct atacccagct aatgaaccca ggcctgcctg attcagcctt
721 ggacatcaat gagtgcctcc gaggagcaag acgtgacctg aaagtatttg ggaatttccc
781 caagcttatt atgacccagg tttccaagtc actgcaagtc actaggatct tccttcaggc
841 tctgaatctt ggaattgaag tgatcaacac aactgatcac ctgaagttca gtaaggactg
901 tggccgaatg ctcaccagaa tgtggtactg ctcttactgc cagggactga tgatggttaa
961 accctgtggc ggttactgca atgtggtcat gcaaggctgt atggcaggtg tggtggagat
1021 tgacaagtac tggagagaat acattctgtc ccttgaagaa cttgtgaatg gcatgtacag
1081 aatctatgac atggagaacg tactgcttgg tctcttttca acaatccatg attctatcca
1141 gtatgtccag aagaatgcag gaaagctgac caccactatt ggcaagttat gtgcccattc
1201 tcaacaacgc caatatagat ttgcttatta tcctgaagat ctctttattg acaagaaagt
1261 attaaaagtt gctcatgtag aacatgaaga aaccttatcc agccgaagaa gggaactaat
1321 tcagaagttg aagtctttca tcagcttcta tagtgctttg cctggctaca tctgcagcca
1381 tagccctgtg gcggaaaacg acaccctttg ctggaatgga caagaactcg tggagagata
1441 cagccaaaag gcagcaagga atggaatgaa aaaccagttc aatctccatg agctgaaaat
1501 gaagggccct gagccagtgg tcagtcaaat tattgacaaa ctgaagcaca ttaaccagct
1561 cctgagaacc atgtctatgc ccaaaggtag agttctggat aaaaacctgg atgaggaagg
1621 gtttgaaagt ggagactgcg gtgatgatga agatgagtgc attggaggct ctggtgatgg
1681 aatgataaaa gtgaagaatc agctccgctt ccttgcagaa ctggcctatg atctggatgt
1741 ggatgatgcg cctggaaaca gtcagcaggc aactccgaag gacaacgaga taagcacctt
1801 tcacaacctc gggaacgttc attccccgct gaagcttctc accagcatgg ccatctcggt
1861 ggtgtgcttc ttcttcctgg tgcactgact gcctggtgcc cagcacatgt gctgccctac
1921 agcaccctgt ggtcttcctc gataaaggga accactttct tatttttttc tatttttttt
1981 tttttgttat cctgtatacc tcctccagcc atgaagtaga ggactaacca tgtgttatgt
2041 tttcgaaaat caaatggtat cttttggagg aagatacatt ttagtggtag catatagatt
2101 gtccttttgc aaagaaagaa aaaaaaccat caagttgtgc caaattattc tcctatgttt
2161 ggctgctaga acatggttac catgtctttc tctctcactc cctccctttc tatcgttctc
2221 tctttgcatg gatttctttg aaaaaaaata aattgctcaa gtaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa aa
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