LOCUS BC035971 2689 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens HERV-H LTR-associating 2, mRNA (cDNA clone MGC:32599
IMAGE:4606764), complete cds.
ACCESSION BC035971
VERSION BC035971.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2689)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2689)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 41 Row: f Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31542933.
FEATURES Location/Qualifiers
source 1..2689
/db_xref="H-InvDB:HIT000051568"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32599 IMAGE:4606764"
/tissue_type="Kidney"
/clone_lib="NIH_MGC_75"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..2689
/gene="HHLA2"
/db_xref="GeneID:11148"
/db_xref="HGNC:HGNC:4905"
/db_xref="MIM:604371"
CDS 415..1659
/gene="HHLA2"
/codon_start=1
/product="HERV-H LTR-associating 2"
/protein_id="AAH35971.1"
/db_xref="GeneID:11148"
/db_xref="HGNC:HGNC:4905"
/db_xref="MIM:604371"
/translation="MKAQTALSFFLILITSLSGSQGIFPLAFFIYVPMNEQIVIGRLD
EDIILPSSFERGSEVVIHWKYQDSYKVHSYYKGSDHLESQDPRYANRTSLFYNEIQNG
NASLFFRRVSLLDEGIYTCYVGTAIQVITNKVVLKVGVFLTPVMKYEKRNTNSFLICS
VLSVYPRPIITWKMDNTPISENNMEETGSLDSFSINSPLNITGSNSSYECTIENSLLK
QTWTGRWTMKDGLHKMQSEHVSLSCQPVNDYFSPNQDFKVTWSRMKSGTFSVLAYYLS
SSQNTIINESRFSWNKELINQSDFSMNLMDLNLSDSGEYLCNISSDEYTLLTIHTVHV
EPSQETASHNKGLWILVPSAILAAFLLIWSVKCCRAQLEARRSRHPADGAQQERCCVP
PGERCPSAPDNGEENVPLSGKV"
BASE COUNT 831 a 589 c 520 g 749 t
ORIGIN
1 agttctcttc aagtcatgta atcgactttt ttgaattagt tttcagtttc attttgtttt
61 ccctaattca agttgggaac acttcatttt ccccaattca agttgggaac acttccttgg
121 tatttccttg ctacatggac tttagcaaat gctactttac tctccttcca gctactcagg
181 aggctgaggc aggagaatcg cttgaacccg ggaggcggag gttacagtga gccttttcct
241 agttttactg ttggaagcct aactcacagg agagattatg caatacagtc ctgaagtcaa
301 ggaaggagag catgtaggag aatactaacc ctgcacagat tgtgatggtg atgtggaata
361 tactaaagcc tagaacgcac ctcctctgca tgactaatat gttctgcaca agacatgaag
421 gcacagacag cactgtcttt cttcctcatt ctcataacat ctctgagtgg atctcaaggc
481 atattccctt tggctttctt catttatgtt cctatgaatg aacaaatcgt cattggaaga
541 cttgatgaag atataattct cccttcttca tttgagaggg gatccgaagt cgtaatacac
601 tggaagtatc aagatagcta taaggttcat agttactaca aaggcagtga ccatttggaa
661 agccaagatc ccagatatgc aaacaggaca tcccttttct ataatgagat tcaaaatggg
721 aatgcgtcac tatttttcag aagagtaagc cttctggacg aaggaattta cacctgctat
781 gtaggaacag caattcaagt gattacaaac aaagtggtgc taaaggtggg agtttttctc
841 acacccgtga tgaagtatga aaagaggaac acaaacagct tcttaatatg cagcgtgtta
901 agtgtttatc ctcgtccaat tatcacgtgg aaaatggaca acacacctat ctctgaaaac
961 aacatggaag aaacagggtc tttggattct ttttctatta acagcccact gaatattaca
1021 ggatcaaatt catcttatga atgtacaatt gaaaattcac tgctgaagca aacatggaca
1081 gggcgctgga cgatgaaaga tggccttcat aaaatgcaaa gtgaacacgt ttcactctca
1141 tgtcaacctg taaatgatta tttttcacca aaccaagact tcaaagttac ttggtccaga
1201 atgaaaagtg ggactttctc tgtcctggct tactatctga gctcctcaca aaatacaatt
1261 atcaatgaat cccgattctc atggaacaaa gagctgataa accagagtga cttctctatg
1321 aatttgatgg atcttaatct ttcagacagt ggggaatatt tatgcaatat ttcttcggat
1381 gaatatactt tacttaccat ccacacagtg catgtagaac cgagccaaga aacagcttcc
1441 cataacaaag gcttatggat tttggtgccc tctgcgattt tggcagcttt tctgctgatt
1501 tggagcgtaa aatgttgcag agcccagcta gaagccagga ggagcagaca ccctgctgat
1561 ggagcccaac aagaaagatg ttgtgtccct cctggtgagc gctgtcccag tgcacccgat
1621 aatggcgaag aaaatgtgcc tctttcagga aaagtatagg aaatgagaga agactgtgac
1681 aactcatgac ctgcatcctt aatatccagt gacttcatct cccctttctt caccacaatt
1741 ccaggcaatg gcctgtcgga ccagacaatt ctaccactgc aaagagttgt aaccattttc
1801 tggtatcaca tttatttttc aagacatact tttcaagaca tcattcactg acccactacc
1861 tgcattgagt ataaatgcct ggatgttaag gattccaatt taactttgaa aagaactgtc
1921 tcattcattt acatttctgt tacagtcagc ccaggaggtt acagtgagct ctccactaag
1981 aatctggaag aaatgcatca ctaggggttg attcccaatc tgatcaactg ataatgggtg
2041 agagagcagg taagagccaa agtcacctta gtggaaaggt taaaaaccag agcctggaaa
2101 ccaagatgat tgatttgaca aggtatttta gtctagtttt atatgaacgg ttgtatcagg
2161 gtaaccaact cgatttggga tgaatcttag ggcaccaaag actaagacag tatctttaag
2221 attgctaggg aaaagggccc tatgtgtcag gcctctgagc ccaagccaag catcgcatcc
2281 cctgtgattt gcacgtatac atccagatgg cctaaagtaa ctgaagatcc acaaaagaag
2341 taaaaatagc cttaactgat gacattccac cattgtgatt tgttcctgcc ccaccctaac
2401 tgatcaatgt actttgtaat ctcccccacc cttaagaagg tactttgtaa tcttccccac
2461 ccttaagaag gttctttgta attctcccca cccttgagaa tgtactttgt gagatccacc
2521 ctgcccacaa aacattgctc ttaacttcac cgcctaaccc aaaacctata agaactaatg
2581 ataatccatc acccttcgct gactctcttt tcggactcag cccacctgca cccaggtgaa
2641 ataaacagct ttattgctca aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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