LOCUS BC035914 3160 bp mRNA linear SYN 02-SEP-2016
DEFINITION Synthetic construct Homo sapiens coiled-coil domain containing 88C,
mRNA (cDNA clone IMAGE:5496219), complete cds.
ACCESSION BC035914
VERSION BC035914.1
KEYWORDS .
SOURCE synthetic construct
ORGANISM synthetic construct
other sequences; artificial sequences.
REFERENCE 1 (bases 1 to 3160)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3160)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: m Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3160
/db_xref="H-InvDB:HIT000051552"
/organism="synthetic construct"
/mol_type="mRNA"
/isolation_source="Homo sapiens; Lymph, lymphoma"
/db_xref="taxon:32630"
/clone="IMAGE:5496219"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3160
/gene="CCDC88C"
/gene_synonym="DAPLE"
/gene_synonym="HkRP3"
/db_xref="GeneID:440193"
/db_xref="HGNC:HGNC:19967"
CDS 295..1815
/gene="CCDC88C"
/gene_synonym="DAPLE"
/gene_synonym="HkRP3"
/codon_start=1
/transl_table=11
/product="CCDC88C protein"
/protein_id="AAH35914.1"
/db_xref="GeneID:440193"
/db_xref="HGNC:HGNC:19967"
/translation="MSVLSPGDLKPKRGSPHRGSLDRTDASTDLAMRSWPSELGSRTC
STSATTTAPSNSTPIARHPGRTKGYNSDDNLCEPSLEFEVPNHRQYVSRPSSLESSRN
TSSNSSPLNLKGSSEQLHGRSESFSSEDLIPSRDLATLPREASTPGRNALGRHEYPLP
RNGPLPQEGAQKRGTAPPYVGVRPCSASPSSEMVTLEEFLEESNRSSPTHDTPSCRDD
LLSDYFRKASDPPAIGGQPGPPAKKEGAKMPTNFVAPTVKMAAPTSEGRPLKPGQYVK
PNFRLTEAEAPPSVAPRQAQPPQSLSLGRPRQAPEALGGRETGSHTLQSPAPPSSHSL
ARERTPLVGKAGSSCQGPGPRSRPLDTRRFSLAPPKEERLAPLHQSATAPAIATAGAG
AAAAGSGSNSQLLHFSPAAAPAARTKPKAPPRSGEVATITPVRAGLSLSEGDGVPGQG
CSEGLPAKSPGRSPDLAPHPGRALEDCSRGSVSKSSPASPEPGGDPQTVWYEYGCV"
BASE COUNT 720 a 972 c 828 g 640 t
ORIGIN
1 ccacgcgtcc gactagttct agatcgcgag cggccgctcg cctttatcat gtgtctgtat
61 tgtgtaccct ccttcatttc cgaaattcaa acaaacaaaa aaagccagcg tctaaaaggc
121 cagatggccg atagcggacc cctcctcctg cccccaattt caagcttaaa gtagccagcg
181 tggattctga tttcaaaata gaagatgagt tgtcacactc cctggaccat ttcttcagca
241 caacacagtt ttaggggagc ctcaggatat acgtgcacat gtccttgggc caggatgtcc
301 gtactaagcc ctggggatct aaaaccaaag cgaggctccc cacacagagg cagccttgac
361 cgcacagatg cctccaccga tctggccatg aggtcctggc cctcggagct gggctcccgg
421 acttgctcaa cttcagccac cactacagcc ccttccaact ccacccccat cgcccggcac
481 ccaggccgca ccaaaggcta taactcagat gacaacctct gtgagccatc cctggagttt
541 gaggtcccca accacaggca gtacgtgtcg cggccaagta gcttagagag cagtagaaac
601 acatccagca acagctcacc tcttaaccta aaaggctcct ccgagcagct ccatggccgg
661 tctgagagct tcagcagcga agacctgatc cccagcaggg acctggccac tttgccccgg
721 gaagccagca caccgggacg caacgccctc ggccgccacg agtacccctt gcctcggaac
781 gggcctctcc cacaggaggg tgcccagaag aggggcacag cccctcccta cgtcggagtg
841 cggccctgct cggcctcccc cagcagtgag atggtcacct tggaggagtt cctggaggag
901 agcaaccgca gctcccccac ccatgacact cccagttgcc gggatgacct gctgagtgac
961 tacttccgaa aggccagcga tcccccagcc atcggaggcc aaccaggacc acctgccaag
1021 aaagaagggg ccaagatgcc caccaacttt gtggccccca ccgtcaaaat ggccgccccc
1081 acctcggagg ggaggccgct gaagcccggg cagtacgtaa agccaaactt cagactgact
1141 gaggccgagg ccccacccag cgtggccccg agacaggccc agcctcccca gagcctgtct
1201 ctgggcagac cccggcaggc tcctgaggcc ttagggggca gagagacagg cagccacacc
1261 ctgcaaagcc ccgcaccccc cagctcccat agcctggccc gggagcggac cccacttgtg
1321 ggaaaggctg gcagctcctg tcagggccca ggtccccgca gccggccgct ggacacgagg
1381 cgcttctccc tggctccccc aaaggaggag aggctggccc ccctgcatca gtctgccaca
1441 gcccccgcca ttgccactgc aggtgctggt gctgctgctg ctggcagtgg cagcaactcc
1501 cagctcctgc acttctcacc tgctgcagcc ccggctgcca ggaccaagcc caaggcgccc
1561 ccacgctcag gggaggtggc caccatcacc cctgtccggg cagggctcag cctctcagag
1621 ggagacgggg tcccggggca gggctgcagt gaggggcttc cggccaagag cccaggtcgg
1681 tctcccgatt tggctcccca ccccggccgg gccctggagg actgcagtcg agggagcgtc
1741 tcaaagagca gtccggcctc cccggagccc ggcggggatc cgcagaccgt gtggtatgag
1801 tacggctgtg tgtgactgtc tcgtggttga gctcgcaaac ctgaaaacta ctgacgcgcc
1861 ttccgactct cacggccttt tctcttgctt gcctgcggtg ccaggagagg gtttggaatg
1921 aggaaagggg ttcccacgca tttctgctgt ttgttctgtg aatggaaaca ctgtgccaag
1981 ccccaagagg attacgcttc caggtgtgta acgtgttttc tgtgtctgcc gcttccagca
2041 gctgatatct ttggaacaaa taatccacgt cagcatgggg accaattcgg atgcaatgac
2101 aaactgactt cccccaaagc agacactact ccagtatgtc ccagtagaac actcatttgc
2161 aatgtgttga gctccgttaa gcacacacac actcacacaa caggctcacg aggctcaggc
2221 ctggcgggtc agaaagccca ctccctctcc caaggccact ggatcccagg agaagcccag
2281 actggcgata ctacaaaggt ctccagggcc tggcagaccc cagagtcagg cctgctgtta
2341 aaaagtgaga gtgctgctgt tccattcctg gggtcccaag cacttccctt taccccagga
2401 cccagggcag cctgcagggc agctggcggt ggccttggcc atttgccccc agcctccagc
2461 tggctcctga gctctgcacc agggggtttg gggaccacac aggcacctgc cttcctagat
2521 ttccctggct cacttttctg caaacactgg atctgccagg cctggggatt ggggggcagg
2581 aaagaggccc ccatccagcc ccctccaggc cagtgtgcac agtgcaccga ggggtcatcc
2641 gcacagagcg aggtgcaagc tcgatgtgta acctggctgc ggcacccgac atccccggtc
2701 tcggggtgtt gatttatttc tgaataactt tttgggtata gaaaccaatt ttttttaata
2761 tatgacatgt atatgtacac actcatgtga aatatgtata ctttgggggg atctatttat
2821 gttccagtgg gagtcactct cttctgtcgg gaatcttatc tgctgctttg tgtctttggt
2881 cagattcctg acaatttagt ttcctgttgt aaaggtgctt ttcctggggt gaactaaacc
2941 tattgatttt tttttttttt aagatttttt tttccttttg atttaatata ctgagaaaga
3001 aatgggagac ttttgaatgt taacaagatc cattttagga gtgtttgggg ttgtgtatta
3061 aatagccatt cattctggaa ctcaaggaca ggactgtaat aaaatggaat ggaaccgaaa
3121 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//