LOCUS BC035882 2311 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens fermitin family homolog 1 (Drosophila), mRNA (cDNA
clone MGC:46404 IMAGE:4941567), complete cds.
ACCESSION BC035882
VERSION BC035882.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2311)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2311)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 78 Row: c Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45598382.
FEATURES Location/Qualifiers
source 1..2311
/db_xref="H-InvDB:HIT000051542"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46404 IMAGE:4941567"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2311
/gene="FERMT1"
/gene_synonym="DTGCU2"
/gene_synonym="KIND1"
/gene_synonym="UNC112A"
/gene_synonym="URP1"
/db_xref="GeneID:55612"
/db_xref="HGNC:HGNC:15889"
/db_xref="MIM:607900"
CDS 473..1960
/gene="FERMT1"
/gene_synonym="DTGCU2"
/gene_synonym="KIND1"
/gene_synonym="UNC112A"
/gene_synonym="URP1"
/codon_start=1
/product="FERMT1 protein"
/protein_id="AAH35882.1"
/db_xref="GeneID:55612"
/db_xref="HGNC:HGNC:15889"
/db_xref="MIM:607900"
/translation="MLSSTDFTFASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVML
KLVEQINISQDWSDFALWWEQKHCWLLKTHWTLDKYGVQADAKLLFTPQHKMLRLRLP
NLKMVRLRVSFSAVVFKAVSDICKILNIRRSEELSLLKPSGDYFKKKKKKDKNNKEPI
IEDILNLESSPTASGSSVSPGLYSKTMTPIYDPINGTPASSTMTWFSDSPLTEQNCSI
LAFSQPPQSPEALADMYQPRSLVDKAKLNAGWLDSSRSLMEQGIQEDEQLLLRFKYYS
FFDLNPKYDAVRINQLYEQARWAILLEEIDCTEEEMLIFAALQYHISKLSLSAETQDF
AGESEVDEIEAALSNLEVTLEGGKADSLLEDITDIPKLADNLKLFRPKKLLPKAFKQY
WFIFKDTSIAYFKNKELEQGEPLEKLNLRGCEVVPDVNVAGRKFGIKLLIPVADGMNE
MYLRCDHVSKTPKILSHFTSTKPKSKTQKCFHKFRALLCHSAIAL"
BASE COUNT 636 a 601 c 548 g 526 t
ORIGIN
1 ccacgcgtcc gagcgtgcgc cccgggttct cgccgccttc tctccgccga gcagcccttc
61 ggccaccctt tgcccttaaa aatctgcaga ctgcgcctcc tctccgcggg agcgagacct
121 agcaggcccg gggctgggcg tgccctcgcc tgccacgctg cgcgctgccc tcagccgggc
181 cgctggggcc gtgcagtgca ccgggcacgc cgcgccaggc tgggggcagg caccgagcct
241 ccgtgggagg tcccgaggca gcttcgcctg ctcgccctgg ctccagccct cacctgccgc
301 agccttagct gagcagccgc cgccactggg cgccccccgc tccccacttc gccagcgccc
361 gctcctcggc tcggcccggg gtagtttgta gggacgcagc tctccacgtg cgcgactgcg
421 aggctggacg ctacgggctc ctggaaagga gcagacacca gcatttgcca caatgctgtc
481 atccactgac tttacatttg cttcctggga gcttgtggtc cgcgttgacc atcccaatga
541 agagcagcag aaagacgtca cactgagagt atctggagac cttcatgttg gaggagtgat
601 gctcaagtta gtagaacaga tcaatatatc ccaagactgg tcagactttg ctctttggtg
661 ggaacagaag cattgctggc ttctgaaaac ccactggacc ctggacaaat atggggtcca
721 ggcagatgca aagcttctct tcacccctca gcataaaatg ctgcgccttc gtctgccgaa
781 tttgaagatg gtgaggttgc gagtcagctt ctcagctgtg gtttttaaag ctgtcagtga
841 tatctgcaaa atcctgaata ttagaagatc agaagagctt tccttgttaa agccgtctgg
901 tgactatttt aagaagaaga agaaaaaaga caaaaataat aaggaaccca taattgaaga
961 tattctaaac ctggagagtt ctccaacagc ttcaggttca tcagtaagtc ctggtttata
1021 cagtaaaacc atgaccccta tatatgaccc catcaatgga acaccagcat catccaccat
1081 gacttggttc agtgacagcc ctttgacgga acaaaactgc agcatcctcg cattcagcca
1141 acccccccag tccccagaag cacttgcgga tatgtaccag cctcggtctc tggttgataa
1201 agccaagctc aatgcaggtt ggctagactc ctcacgctcc cttatggaac aaggcatcca
1261 agaggatgag cagctgctct tacgatttaa atattattct ttcttcgact tgaatcctaa
1321 atatgatgct gtccgaataa accaactcta tgagcaagcc aggtgggcca ttctcttaga
1381 agaaattgat tgcacagagg aagaaatgtt gatctttgca gctctacagt accacattag
1441 caaactgtcg ttgtctgctg aaacacagga ttttgcaggc gagtccgagg ttgatgaaat
1501 agaagcggcg ctttctaatt tggaagtaac cctagaaggt ggaaaagcgg acagcctttt
1561 ggaggacatt actgatatcc ctaaacttgc agataatctc aaattattta ggcccaagaa
1621 gttactacca aaagctttca aacaatattg gtttatcttt aaagacacat ccatagcata
1681 ctttaaaaat aaggaacttg aacaaggaga accactagaa aaactaaatc ttagaggctg
1741 cgaagttgtg cccgatgtaa atgtagcagg aagaaaattt ggaatcaagt tactaatccc
1801 tgttgccgat ggtatgaatg aaatgtattt gagatgtgac catgtgagta aaaccccaaa
1861 aatattaagt cacttcacct ccactaagcc taagagcaaa acccaaaaat gttttcacaa
1921 atttagagca ctattgtgtc actcagctat tgctttgtaa caaacaatca cagtgtaaca
1981 aaatcacaat gacattctaa caataaacat ttgccatgca gtggctcaca cctgtaatcc
2041 cagcactttg ggaggccaag gtgggcagat cacctgaggt caggagttca agaccagtct
2101 ggccgatatg gtgaaacctc atctctacta aaaatacaaa aattggccag gcatggtggt
2161 gggtgcctgt ggtcccagct gcttgggagg ctgaggcagg agaatcactt gaacccagga
2221 tgcagagttt gcagtgagcc aagatggcac caccgcactc cagcctgggt gacagagcga
2281 gactctgttc ccccagaaaa aaaaaaaaaa a
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