LOCUS BC035822 2819 bp mRNA linear HUM 28-SEP-2006
DEFINITION Homo sapiens UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 6 (GalNAc-T6), mRNA (cDNA clone
MGC:46032 IMAGE:5552059), complete cds.
ACCESSION BC035822
VERSION BC035822.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2819)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2819)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: b Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13124893.
FEATURES Location/Qualifiers
source 1..2819
/db_xref="H-InvDB:HIT000051524"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46032 IMAGE:5552059"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2819
/gene="GALNT6"
/gene_synonym="GALNAC-T6"
/gene_synonym="GalNAcT6"
/db_xref="GeneID:11226"
/db_xref="HGNC:HGNC:4128"
/db_xref="MIM:605148"
CDS 325..2193
/gene="GALNT6"
/gene_synonym="GALNAC-T6"
/gene_synonym="GalNAcT6"
/codon_start=1
/product="UDP-N-acetyl-alpha-D-galactosamine:polypeptide
N-acetylgalactosaminyltransferase 6 (GalNAc-T6)"
/protein_id="AAH35822.2"
/db_xref="GeneID:11226"
/db_xref="HGNC:HGNC:4128"
/db_xref="MIM:605148"
/translation="MRLLRRRHMPLRLAMVGCAFVLFLFLLHRDVSSREEATEKPWLK
SLVSRKDHVLDLMLEAMNNLRDSMPKLQIRAPEAQQTLFSINQSCLPGFYTPAELKPF
WERPPQDPNAPGADGKAFQKSKWTPLETQEKEEGYKKHCFNAFASDRISLQRSLGPDT
RPPECVDQKFRRCPPLATTSVIIVFHNEAWSTLLRTVYSVLHTTPAILLKEIILVDDA
STEEHLKEKLEQYVKQLQVVRVVRQEERKGLITARLLGASVAQAEVLTFLDAHCECFH
GWLEPLLARIAEDKTVVVSPDIVTIDLNTFEFAKPVQRGRVHSRGNFDWSLTFGWETL
PPHEKQRRKDETYPIKSPTFAGGLFSISKSYFEHIGTYDNQMEIWGGENVEMSFRVWQ
CGGQLEIIPCSVVGHVFRTKSPHTFPKGTSVIARNQVRLAEVWMDSYKKIFYRRNLQA
AKMAQEKSFGDISERLQLREQLHCHNFSWYLHNVYPEMFVPDLTPTFYGAIKNLGTNQ
CLDVGENNRGGKPLIMYSCHGLGGNQYFEYTTQRDLRHNIAKQLCLHVSKGALGLGSC
HFTGKNSQVPKDEEWELAQDQLIRNSGSGTCLTSQDKKPAMAPCNPSDPHQLWLFV"
BASE COUNT 672 a 806 c 779 g 562 t
ORIGIN
1 ccacgcgtcc ggtccctcct gccttcgctc tctgctggtc gcggtggcct gtagctcctc
61 cctcggtagg acccccctcc accttggcgc ttacgagatg aatgaggagc ccagacctct
121 ggaacttgga gggttgttca gattcccagg ctgacaaaaa ggagaaacag cttttacttg
181 catccagggc caatcatcgc agacccagac gtctgcagag ggctgaggcc ccagcttgtg
241 gccaccacaa cgtatcaagc tatctccagg gttgggctca ggactcagag ctgacgcagc
301 tggggtgccc cttggttctg gaggatgagg ctcctccgca gacgccacat gcccctgcgc
361 ctggccatgg tgggctgcgc ctttgtgctc ttcctcttcc tcctgcatag ggatgtgagc
421 agcagagagg aggccacaga gaagccgtgg ctgaagtccc tggtgagccg gaaggatcac
481 gtcctggacc tcatgctgga ggccatgaac aaccttagag attcaatgcc caagctccaa
541 atcagggctc cagaagccca gcagactctg ttctccataa accagtcctg cctccctggg
601 ttctataccc cagctgaact gaagcccttc tgggaacggc caccacagga ccccaatgcc
661 cctggggcag atggaaaagc atttcagaag agcaagtgga cccccctgga gacccaggaa
721 aaggaagaag gctataagaa gcactgtttc aatgcctttg ccagcgaccg gatctccctg
781 cagaggtccc tggggccaga cacccgacca cctgagtgtg tggaccagaa gttccggcgc
841 tgccccccac tggccaccac cagcgtgatc attgtgttcc acaacgaagc ctggtccaca
901 ctgctgcgaa cagtgtacag cgtcctacac accacccctg ccatcttgct caaggagatc
961 atactggtgg atgatgccag cacagaggag cacctaaagg agaagctgga gcagtacgtg
1021 aagcagctgc aggtggtgag ggtggtgcgg caggaggagc ggaaggggct gatcaccgcc
1081 cggctgctgg gggccagcgt ggcacaggcg gaggtgctca cgttcctgga tgcccactgt
1141 gagtgcttcc acggctggct ggagcccctc ctggctcgaa tcgctgagga caagacagtg
1201 gtggtgagcc cagacatcgt caccatcgac cttaatactt ttgagttcgc caagcccgtc
1261 cagaggggca gagtccatag ccgaggcaac tttgactgga gcctgacctt cggctgggaa
1321 acacttcctc cacatgagaa gcagaggcgc aaggatgaaa cctaccccat caaatccccg
1381 acgtttgctg gtggcctctt ctccatctcc aagtcctact ttgagcacat cggtacctat
1441 gataatcaga tggagatctg gggaggggag aacgtggaaa tgtccttccg ggtgtggcag
1501 tgtgggggcc agctggagat catcccctgc tctgtcgtag gccatgtgtt ccggaccaag
1561 agcccccaca ccttccccaa gggcactagt gtcattgctc gcaatcaagt gcgcctggca
1621 gaggtctgga tggacagcta caagaagatt ttctatagga gaaatctgca ggcagcaaag
1681 atggcccaag agaaatcctt cggtgacatt tcggaacgac tgcagctgag ggaacaactg
1741 cactgtcaca acttttcctg gtacctgcac aatgtctacc cagagatgtt tgttcctgac
1801 ctgacgccca ccttctatgg tgccatcaag aacctcggca ccaaccaatg cctggatgtg
1861 ggtgagaaca accgcggggg gaagcccctc atcatgtact cctgccacgg ccttggcggc
1921 aaccagtact ttgagtacac aactcagagg gaccttcgcc acaacatcgc aaagcagctg
1981 tgtctacatg tcagcaaggg tgctctgggc cttgggagct gtcacttcac tggcaagaat
2041 agccaggtcc ccaaggacga ggaatgggaa ttggcccagg atcagctcat caggaactca
2101 ggatctggta cctgcctgac atcccaggac aaaaagccag ccatggcccc ctgcaatccc
2161 agtgaccccc atcagttgtg gctctttgtc taggacccag atcatcccca gagagagccc
2221 ccacaagctc ctcaggaaac aggattgctg atgtctggga acctgatcac cagcttctct
2281 ggaggccgta aagatggatt tctaaaccca ctgggtggca aggcaggacc ttcctaatcc
2341 ttgcaacaac attgggccca ttttctttcc ttcacaccga tggaagagac cattaggaca
2401 tatatttagc ctagcgtttt cctgttctag aaatagaggc tcccaaagta gggaaggcag
2461 ctgggggagg gttcagggca gcaatgctga gttcaagaaa agtacttcag gctgggcaca
2521 gtggctcatg cctgaaatcc tagcactttg ggaagacaat gtgggagaat ggcttgagcc
2581 caggagttca agaccggcct gagcaacata gtgaggatcc catctctacg cccaccctcc
2641 ccccggcaaa aaaaaaagct gggtatggtg gcttatgcct gtagtcgcag ctactcagaa
2701 ggctgaggtg ggaggattgc ttgttccccg gaggttgaag ctacagtgag ccttgattgt
2761 gtcactgcac tccagcctgg gcaacaggta agactctgtc tcaaaaaaaa aaaaaaaaa
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