LOCUS BC035812 3851 bp mRNA linear HUM 16-FEB-2007
DEFINITION Homo sapiens protocadherin 1, mRNA (cDNA clone MGC:45991
IMAGE:5753628), complete cds.
ACCESSION BC035812
VERSION BC035812.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3851)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3851)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: n Column: 9.
FEATURES Location/Qualifiers
source 1..3851
/db_xref="H-InvDB:HIT000051519"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45991 IMAGE:5753628"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3851
/gene="PCDH1"
/gene_synonym="PC42"
/gene_synonym="PCDH42"
/db_xref="GeneID:5097"
/db_xref="HGNC:HGNC:8655"
/db_xref="MIM:603626"
CDS 118..3300
/gene="PCDH1"
/gene_synonym="PC42"
/gene_synonym="PCDH42"
/codon_start=1
/product="protocadherin 1"
/protein_id="AAH35812.1"
/db_xref="GeneID:5097"
/db_xref="HGNC:HGNC:8655"
/db_xref="MIM:603626"
/translation="MDSGAGGRRCPEAALLILGPPRMEHLRHSPGPGGQRLLLPSMLL
ALLLLLAPSPGHATRVVYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVD
GKTGDIFTTETSIDREGLRECQNQLPGDPCILEFEVSITDLVQNGSPRLLEGQIEVQD
INDNTPNFASPVITLAIPENTNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFG
LQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDN
APKFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDR
NTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGI
GLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGS
DSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQ
SVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQV
KTSLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMEN
MPALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVA
AEDFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRG
KPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFG
VVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGK
KSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSN
SPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYP
SKQVGQPFQLSTPQPLPHPYHGAIWTEVWE"
BASE COUNT 889 a 1140 c 1105 g 717 t
ORIGIN
1 cgcaaagccg ccgggctgct gcgcccagag ccagccggag ccggagccgg agcccgaact
61 gcagctccag ccccagccgt gcggagccgc agcccaggcc ggggccggcg gcggctcatg
121 gacagcgggg cgggcggccg gcgctgcccg gaggcggccc tcctgattct ggggcctccc
181 aggatggagc acctgaggca cagcccaggc cctggggggc aacggctact gctgccctcc
241 atgctgctag cactgctgct cctgctggct ccatccccag gccacgccac tcgggtagtg
301 tacaaggtgc cggaggaaca gccacccaac accctcattg ggagcctcgc agccgactat
361 ggttttccag atgtggggca cctgtacaag ctagaggtgg gtgccccgta ccttcgcgtg
421 gatggcaaga caggtgacat tttcaccacc gagacctcca tcgaccgtga ggggctccgt
481 gaatgccaga accagctccc tggtgatccc tgcatcctgg agtttgaggt atctatcaca
541 gacctcgtgc agaatggcag cccccggctg ctagagggcc agatagaagt acaagacatc
601 aatgacaaca cacccaactt cgcctcacca gtcatcactc tggccatccc tgagaacacc
661 aacatcggct cactcttccc catcccgctg gcttcagacc gtgatgctgg tcccaacggt
721 gtggcatcct atgagctgca ggctgggcct gaggcccagg agctatttgg gctgcaggtg
781 gcagaggacc aggaggagaa gcaaccacag ctcattgtga tgggcaacct ggaccgtgag
841 cgctgggact cctatgacct caccatcaag gtgcaggatg gcggcagccc cccacgcgcc
901 agcagtgccc tgctgcgtgt caccgtgctt gacaccaatg acaacgcccc caagtttgag
961 cggccctcct atgaggccga actatctgag aatagcccca taggccactc ggtcatccag
1021 gtgaaggcca atgactcaga ccaaggtgcc aatgcagaaa tcgaatacac attccaccag
1081 gcgcccgaag ttgtgaggcg tcttcttcga ctggacagga acactggact tatcactgtt
1141 cagggcccgg tggaccgtga ggacctaagc accctgcgct tctcagtgct tgctaaggac
1201 cgaggcacca accccaagag tgcccgtgcc caggtggttg tgaccgtgaa ggacatgaat
1261 gacaatgccc ccaccattga gatccggggc atagggctag tgactcatca agatgggatg
1321 gctaacatct cagaggatgt ggcagaggag acagctgtgg ccctggtgca ggtgtctgac
1381 cgagatgagg gagagaatgc agctgtcacc tgtgtggtgg caggtgatgt gcccttccag
1441 ctgcgccagg ccagtgagac aggcagtgac agcaagaaga agtatttcct gcagactacc
1501 accccgctag actacgagaa ggtcaaagac tacaccattg agattgtggc tgtggactct
1561 ggcaaccccc cactctccag cactaactcc ctcaaggtgc aggtggtgga cgtcaatgac
1621 aacgcacctg tcttcactca gagtgtcact gaggtcgcct tcccggaaaa caacaagcct
1681 ggtgaagtga ttgctgagat cactgccagt gatgctgact ctggctctaa tgctgagctg
1741 gtttactctc tggagcctga gccggctgct aagggcctct tcaccatctc acccgagact
1801 ggagagatcc aggtgaagac atctctggat cgggaacagc gggagagcta tgagttgaag
1861 gtggtggcag ctgaccgggg cagtcctagc ctccagggca cagccactgt ccttgtcaat
1921 gtgctggact gcaatgacaa tgaccccaaa tttatgctga gtggctacaa cttctcagtg
1981 atggagaaca tgccagcact gagtccagtg ggcatggtga ctgtcattga tggagacaag
2041 ggggagaatg cccaggtgca gctctcagtg gagcaggaca acggtgactt tgttatccag
2101 aatggcacag gcaccatcct atccagcctg agctttgatc gagagcaaca aagcacctac
2161 accttccagc tgaaggcagt ggatggtggc gtcccacctc gctcagctta cgttggtgtc
2221 accatcaatg tgctggacga gaatgacaac gcaccctata tcactgcccc ttctaacacc
2281 tctcacaagc tgctgacccc ccagacacgt cttggtgaga cggtcagcca ggtggcagcc
2341 gaggactttg actctggtgt caatgccgag ctgatctaca gcattgcagg tggcaaccct
2401 tatggactct tccagattgg gtcacattca ggtgccatca ccctggagaa ggagattgag
2461 cggcgccacc atgggctaca ccgcctggtg gtgaaggtca gtgaccgcgg caagccccca
2521 cgctatggca cagccttggt ccatctttat gtcaatgaga ctctggccaa ccgcacgctg
2581 ctggagaccc tcctgggcca cagcctggac acgccgctgg atattgacat tgctggggat
2641 ccagaatatg agcgctccaa gcagcgtggc aacattctct ttggtgtggt ggctggtgtg
2701 gtggccgtgg ccttgctcat cgccctggcg gttcttgtgc gctactgcag acagcgggag
2761 gccaaaagtg gttaccaggc tggtaagaag gagaccaagg acctgtatgc ccccaagccc
2821 agtggcaagg cctccaaggg aaacaaaagc aaaggcaaga agagcaagtc cccaaagccc
2881 gtgaagccag tggaggacga ggatgaggcc gggctgcaga agtccctcaa gttcaacctg
2941 atgagcgatg cccctgggga cagtccccgc atccacctgc ccctcaacta cccaccaggc
3001 agccctgacc tgggccgcca ctatcgctct aactccccac tgccttccat ccagctgcag
3061 ccccagtcac cctcagcctc caagaagcac caggtggtac aggacctgcc acctgcaaac
3121 acattcgtgg gcaccgggga caccacgtcc acgggctctg agcagtactc cgactacagc
3181 taccgcacca acccccccaa ataccccagc aagcaggtag gccagccctt tcagctcagc
3241 acaccccagc ccctacccca cccctaccac ggagccatct ggaccgaggt gtgggagtga
3301 tggagcaggt ttactgtgcc tgcccgtgtt gggggccagc ctgagccagc agtgggaggt
3361 ggggccttag tgcctcaccg ggcacacgga ttaggctgag tgaagattaa gggagggtgt
3421 gctctgtggt ctcctccctg ccctctcccc actggggaga gacctgtgat ttgccaagtc
3481 cctggaccct ggaccagcta ctgggcctta tgggttgggg gtggtaggca ggtgagcgta
3541 agtggggagg gaaatgggta agaagtctac tccaaaccta ggtctctatg tcagaccaga
3601 cctaggtgct tctctaggag ggaaacaggg agacctgggg tcctgtggat aactgagtgg
3661 ggagtctgcc aggggagggc accttcccat tgtgccttct gtgtgtattg tgcattaacc
3721 tcttcctcac cactaggctt ctggggctgg gtcccacatg cccttgaccc tgacaataaa
3781 gttctctatt tttggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3841 aaaaaaaaaa a
//