LOCUS BC035786 2379 bp mRNA linear HUM 02-MAR-2004
DEFINITION Homo sapiens chromosome 9 open reading frame 86, mRNA (cDNA clone
IMAGE:5728463), partial cds.
ACCESSION BC035786
VERSION BC035786.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2379)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2379)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: h Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13435142.
FEATURES Location/Qualifiers
source 1..2379
/db_xref="H-InvDB:HIT000094084"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5728463"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2379
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/db_xref="GeneID:55684"
CDS 360..>2379
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/codon_start=1
/product="C9orf86 protein"
/protein_id="AAH35786.1"
/db_xref="GeneID:55684"
/translation="MKIVIRGDRNTGKTALWHRLQGRPFVEEYIPTQEIQVTSIHWSY
KTTDDIVKVEVWDVVDKGKCKKRGDGLKMENDPQEAESEMALDAEFLDVYKNCNGVVM
MFDITKQWTFNYILRELPKVPTHVPVCVLGNYRDMGEHRVILPDDVRDFIDNLDSRPP
GSSYFRYAESSMKNSFGLKYLHKFFNIPFLQLQRETLLRQLETNQLDMDATLEELSVQ
QETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPGTPQ
PAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAPRRSIISRLFGTSPATEAAPPPPE
PVPAAQGPATVQSVEDFVPDDRLDRSFLEDTTPARDEKKVGAKAAQQDSDSDGEALGG
NPMVAGFQDDVDLEDQPRGSPPLPAGPVPSQDITLSSEEEAEVAAPTKGPAPAPQQCS
EPETKWSSIPASKPRRGTAPTRTAAPPWPGGVSVRTGPEKRSSTRPPAEMEPGKGEQA
SSSESDPEGPIAAQMLSFVMDDPDFESEGSDTQRRADDFPVRDDPSDVTDEDEGPAEP
PPPPKLPLPAFRLKNDSDLFGLGLEEAGPKESSEEGKEGKTPSKEKKKKKKKGKEEEE
KAAKKKSKHKKSKDKEEGKEERRRRQQRPPRSRERTAADELEAFLGGGA"
misc_feature 363..896
/gene="C9orf86"
/gene_synonym="bA216L13.9"
/gene_synonym="FLJ10101"
/gene_synonym="FLJ13045"
/gene_synonym="pp8875"
/note="Ras; Region: Ras family. Includes sub-families Ras,
Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif
with GTP_EFTU, arf and myosin_head. See pfam00009
pfam00025, pfam00063. The high cutoff is so high to avoid
overlaps with related families"
/db_xref="CDD:pfam00071"
BASE COUNT 516 a 757 c 775 g 331 t
ORIGIN
1 tggagagcgg tcgcgccgga ggccgcgggg gccggagcgg agcagccgcg gctgaggttc
61 ccgagtcgcc gctcggggct gcgctccgcc gccgggaccc cggcctctgg ccgcgccggc
121 tccggcctcc gggggggccg gggccgccgg gacatggtgc cagtcgcacc ccttccccgc
181 cgccgctgag ctcgccggcc gcgcccgggc tgggacgtcc gagcgggaag atgttttccg
241 ccctgaagaa gctggtgggg tcggaccagg ccccgggccg ggacaagaac atccccgccg
301 ggctgcagtc catgaaccag gcgttgcaga ggcgcttcgc caagggggtg cagtacaaca
361 tgaagatagt gatccgggga gacaggaaca cgggcaagac agcgctgtgg caccgcctgc
421 agggccggcc gttcgtggag gagtacatcc ccacacagga gatccaggtc accagcatcc
481 actggagcta caagaccacg gatgacatcg tgaaggttga agtctgggat gtagtagaca
541 aaggaaaatg caaaaagcga ggcgacggct taaagatgga gaacgacccc caggaggcgg
601 agtctgaaat ggccctggat gctgagttcc tggacgtgta caagaactgc aacggggtgg
661 tcatgatgtt cgacattacc aagcagtgga ccttcaatta cattctccgg gagcttccaa
721 aagtgcccac ccacgtgcca gtgtgcgtgc tggggaacta ccgggacatg ggcgagcacc
781 gagtcatcct gccggacgac gtgcgtgact tcatcgacaa cctggacagc agacctccag
841 gttcctccta cttccgctat gctgagtctt ccatgaagaa cagcttcggc ctaaagtacc
901 ttcataagtt cttcaatatc ccatttttgc agcttcagag ggagacgctg ttgcggcagc
961 tggagacgaa ccagctggac atggacgcca cgctggagga gctgtcggtg cagcaggaga
1021 cggaggacca gaactacggc atcttcctgg agatgatgga ggctcgcagc cgtggccatg
1081 cgtccccact ggcggccaac gggcagagcc catccccggg ctcccagtca ccagtggtgc
1141 ctgcaggcgc tgtgtccacg gggagctcca gccccggcac accccagccc gccccacagc
1201 tgcccctcaa tgctgcccca ccatcctctg tgccccctgt accaccctca gaggccctgc
1261 ccccacctgc gtgcccctca gcccccgccc cacggcgcag catcatctct aggctgtttg
1321 ggacgtcacc tgccaccgag gcagcccctc cacctccaga gccagtcccg gccgcacagg
1381 gcccagcaac ggtccagagt gtggaggact ttgttcctga cgaccgcctg gaccgcagct
1441 tcctggaaga cacaaccccc gccagggacg agaagaaggt gggggccaag gctgcccagc
1501 aggacagcga cagtgatggg gaggccctgg gcggcaaccc gatggtggca gggttccagg
1561 acgatgtgga cctcgaagac cagccacgtg ggagtccccc gctgcctgca ggccccgtcc
1621 ccagtcaaga catcactctt tcgagtgagg aggaagcaga agtggcagct cccacaaaag
1681 gccctgcccc agctccccag cagtgctcag agccagagac caagtggtcc tccataccag
1741 cttcgaagcc acggaggggg acagctccca cgaggaccgc agcacccccc tggccaggcg
1801 gtgtctctgt tcgcacaggt ccggagaagc gcagcagcac caggccccct gctgagatgg
1861 agccggggaa gggtgagcag gcctcctcgt cggagagtga ccccgaggga cccattgctg
1921 cacaaatgct gtccttcgtc atggatgacc ccgactttga gagcgaggga tcagacacac
1981 agcgcagggc ggatgacttt cccgtgcgag atgacccctc cgatgtgact gacgaggatg
2041 agggccctgc cgagccgccc ccacccccca agctccctct ccccgccttc agactgaaga
2101 atgactcgga cctcttcggg ctggggctgg aggaggccgg acccaaggag agcagtgagg
2161 aaggtaagga gggcaaaacc ccctctaagg agaagaagaa gaagaagaaa aaaggcaaag
2221 aggaagaaga aaaagctgcc aagaagaaga gcaaacacaa gaagagcaag gacaaggagg
2281 agggcaagga ggagcggcga cggcggcagc agcggccccc gcgcagcagg gagaggacgg
2341 ctgccgatga gctggaggct ttcctggggg gcggggccc
//