LOCUS BC035716 1593 bp mRNA linear HUM 17-SEP-2007
DEFINITION Homo sapiens interferon regulatory factor 9, mRNA (cDNA clone
MGC:46151 IMAGE:5588434), complete cds.
ACCESSION BC035716
VERSION BC035716.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1593)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1593)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC035716.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 79 Row: e Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25282406.
FEATURES Location/Qualifiers
source 1..1593
/db_xref="H-InvDB:HIT000094043"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:46151 IMAGE:5588434"
/tissue_type="Ovary, pooled from 3 adults"
/clone_lib="NIH_MGC_125"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1593
/gene="IRF9"
/gene_synonym="IRF-9"
/gene_synonym="ISGF3"
/gene_synonym="ISGF3G"
/gene_synonym="p48"
/db_xref="GeneID:10379"
/db_xref="HGNC:HGNC:6131"
/db_xref="MIM:147574"
CDS 4..1185
/gene="IRF9"
/gene_synonym="IRF-9"
/gene_synonym="ISGF3"
/gene_synonym="ISGF3G"
/gene_synonym="p48"
/codon_start=1
/product="interferon regulatory factor 9"
/protein_id="AAH35716.1"
/db_xref="GeneID:10379"
/db_xref="HGNC:HGNC:6131"
/db_xref="MIM:147574"
/translation="MASGRARCTRKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKH
AGKQDFREDQDAAFFKAWAIFKGKYKEGDTGGPAVWKTRLRCALNKSSEFKEVPERGR
MDVAEPYKVYQLLPPGIVSGQPGTQKVPSKRQHSSVSSERKEEEDAMQNCTLSPSVLQ
DSLNNEEEGASGGAVHSDIGSSSSSSSPEPQEVTDTTEAPFQGDQRSLEFLLPPEPDY
SLLLTFIYNGRVVGEAQVQSLDCRLVAEPSGSESSMEQVLFPKPGPLEPTQRLLSQLE
RGILVASNPRGLFVQRLCPIPISWNAPQAPPGPGPHLLPSNECVELFRTAYFCRDLVR
YFQGLGPPPKFQVTLNFWEESHGSSHTPQNLITVKMEQAFARYLLEQTPEQQAAILSL
V"
BASE COUNT 396 a 427 c 420 g 350 t
ORIGIN
1 aggatggcat caggcagggc acgctgcacc cgaaaactcc ggaactgggt ggtggagcaa
61 gtggagagtg ggcagtttcc cggagtgtgc tgggatgata cagctaagac catgttccgg
121 attccctgga aacatgcagg caagcaggac ttccgggagg accaggatgc tgccttcttc
181 aaggcctggg caatatttaa gggaaagtat aaggaggggg acacaggagg tccagctgtc
241 tggaagactc gcctgcgctg tgcactcaac aagagttctg aatttaagga ggttcctgag
301 aggggccgca tggatgttgc tgagccctac aaggtgtatc agttgctgcc accaggaatc
361 gtctctggcc agccagggac tcagaaagta ccatcaaagc gacagcacag ttctgtgtcc
421 tctgagagga aggaggaaga ggatgccatg cagaactgca cactcagtcc ctctgtgctc
481 caggactccc tcaataatga ggaggagggg gccagtgggg gagcagtcca ttcagacatt
541 gggagcagca gcagcagcag cagccctgag ccacaggaag ttacagacac aactgaggcc
601 ccctttcaag gggatcagag gtccctggag tttctgcttc ctccagagcc agactactca
661 ctgctgctca ccttcatcta caacgggcgc gtggtgggcg aggcccaggt gcaaagcctg
721 gattgccgcc ttgtggctga gccctcaggc tctgagagca gcatggagca ggtgctgttc
781 cccaagcctg gcccactgga gcccacgcag cgcctgctga gccagcttga gaggggcatc
841 ctagtggcca gcaacccccg aggcctcttc gtgcagcgcc tttgccccat ccccatctcc
901 tggaatgcac cccaggctcc acctgggcca ggcccgcatc tgctgcccag caacgagtgc
961 gtggagctct tcagaaccgc ctacttctgc agagacttgg tcaggtactt tcagggcctg
1021 ggccccccac cgaagttcca ggtaacactg aatttctggg aagagagcca tggctccagc
1081 catactccac agaatcttat cacagtgaag atggagcagg cctttgcccg atacttgctg
1141 gagcagactc cagagcagca ggcagccatt ctgtccctgg tgtagagcct gggggaccca
1201 tcttccacct cacctctttg ttcttcctgt ctcctttgaa gtagactcat tcttcacacg
1261 attgacctgt cctctttgtg ataattctca gtagttgtcc gtgataatcg tgtcctgaaa
1321 atcctcgcac acactggctg gtggagaact caaggctaat tttttatcct tttttttttt
1381 taattttgag atatacgccc tctttcatct gtaagggact aggaaattcc aaatggtgtg
1441 aacccagggg gcctttccct cttccctgac ctcccaactc taaagccaag cactttatat
1501 tttcctctta gatattcact aaggacttaa aataaaattt tattgaaagg gggaaaaaaa
1561 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
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