LOCUS BC035609 5840 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens myotubularin related protein 4, mRNA (cDNA clone
MGC:45014 IMAGE:5201989), complete cds.
ACCESSION BC035609
VERSION BC035609.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5840)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5840)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: n Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31377795.
FEATURES Location/Qualifiers
source 1..5840
/db_xref="H-InvDB:HIT000051439"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45014 IMAGE:5201989"
/tissue_type="Lung, Spleen, fetal, pooled"
/clone_lib="NIH_MGC_122"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..5840
/gene="MTMR4"
/gene_synonym="FYVE-DSP2"
/gene_synonym="KIAA0647"
/gene_synonym="ZFYVE11"
/db_xref="GeneID:9110"
/db_xref="HGNC:HGNC:7452"
/db_xref="MIM:603559"
CDS 72..3659
/gene="MTMR4"
/gene_synonym="FYVE-DSP2"
/gene_synonym="KIAA0647"
/gene_synonym="ZFYVE11"
/codon_start=1
/product="myotubularin related protein 4"
/protein_id="AAH35609.1"
/db_xref="GeneID:9110"
/db_xref="HGNC:HGNC:7452"
/db_xref="MIM:603559"
/translation="MGEEGPPSLEYIQAKDLFPPKELVKEEENLQVPFTVLQGEGVEF
LGRAADALIAISNYRLHIKFKDSVINVPLRMIDSVESRDMFQLHISCKDSKVVRCHFS
TFKQCQEWLSRLSRATARPAKPEDLFAFAYHAWCLGLTEEDQHTHLCQPGEHIRCRQE
AELARMGFDLQNVWRVSHINSNYKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPV
VVYRHLRNGAAIARCSQPEISWWGWRNADDEYLVTSIAKACALDPGTRATGGSLSTGN
NDTGEACDADFDSSLTACSGVESTAAPQKLLILDARSYTAAVANRAKGGGCECEEYYP
NCEVVFMGMANIHAIRNSFQYLRAVCSQMPDPSNWLSALESTKWLQHLSVMLKAAVLV
ANTVDREGRPVLVHCSDGWDRTPQIVALAKILLDPYYRTLEGFQVLVESDWLDFGHKF
GDRCGHQENVEDQNEQCPVFLQWLDSVHQLLKQFPCLFEFNEAFLVKLVQHTYSCLYG
TFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFLYTPSSDMVLHPVCHVRALHLW
TAVYLPASSPCTLGEENMDLYLSPVAQSQEFSGRSLDRLPKTRSMDDLLSACDTSSPL
TRTSSDPNLNNHCQEVRVGLEPWHSNPEGSETSFVDSGVGGPQQTVGEVGLPPPLPSS
QKDYLSNKPFKSHKSCSPSYKLLNTAVPREMKSNTSDPEIKVLEETKGPAPDPSAQDE
LGRTLDGIGEPPEHCPETEAVSALSKVISNKCDGVCNFPESSQNSPTGTPQQAQPDSM
LGVPSKCVLDHSLSTVCNPPSAACQTPLDPSTDFLNQDPSGSVASISHQEQLSSVPDL
THGEEDIGKRGNNRNGQLLENPRFGKMPLELVRKPISQSQISEFSFLGSNWDSFQGMV
TSFPSGEATPRRLLSYGCCSKRPNSKQMRATGPCFGGQWAQREGVKSPVCSSHSNGHC
TGPGGKNQMWLSSHPKQVSSTKPVPLNCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEA
GYKQEVEQLRRQVRELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDH
SEDCLSEASWEPVDKKETEVTRWVPDHMASHCYNCDCEFWLAKRRHHCRNCGNVFCAG
CCHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELMSQQLKKPIATASS"
BASE COUNT 1492 a 1379 c 1440 g 1529 t
ORIGIN
1 gcgcggcctc agagggtcgg gcggacgccg cctggtgaga agcaggcagc cagtaccctt
61 gccacggtag aatgggtgag gaggggcccc ccagcctgga gtacatccaa gccaaggatc
121 tgttcccccc caaggaacta gtgaaggagg aagagaatct tcaggtcccc ttcacagtgc
181 tgcagggtga gggagtagag ttcctgggcc gggcagccga tgccctcatt gccatctcta
241 actaccggct gcatatcaaa ttcaaggact ctgtcatcaa cgtccccctc cggatgattg
301 acagtgtgga gagccgtgat atgttccagt tgcacatttc ctgcaaggac tccaaagtgg
361 tgaggtgcca cttctccact tttaagcagt gccaagagtg gctctcacgg ctaagccgag
421 ccacagcaag acctgccaag cctgaagacc tctttgcctt tgcctaccat gcctggtgcc
481 tggggctgac cgaggaggac cagcacactc acctatgtca gccaggtgag cacatacgtt
541 gtcgacagga ggcggagctt gcaaggatgg gctttgacct gcagaacgtc tggagagtct
601 cacacatcaa cagcaactac aaattgtgcc ccagttaccc ccagaagctg ctggttcctg
661 tgtggatcac tgacaaagag ctggagaacg tggcttcctt ccgctcctgg aagcggattc
721 ccgtggttgt gtatagacac ttgcgcaatg gggctgccat cgcccgctgc agccagccag
781 agatcagctg gtggggctgg cgcaatgctg atgatgagta cctggtcacg tccattgcta
841 aagcctgtgc cctggacccg gggacaaggg ccactggggg ctccctcagc accgggaata
901 atgataccgg cgaggcgtgt gatgctgact ttgattcttc tctgactgcg tgctctggag
961 tggagagcac agcagctcct caaaagctgc tgatcctgga tgcgcgatcc tacacggcag
1021 cagtggccaa ccgggccaag ggtggaggct gtgaatgtga agagtactat cccaactgtg
1081 aggtcgtgtt catgggaatg gccaacatcc atgccatccg gaacagcttt cagtacctcc
1141 gggctgtgtg tagccagatg ccggatccta gcaactggtt gtcggcactg gagagtacca
1201 aatggctgca gcacttgtcg gtgatgctaa aagcagctgt gctggtggct aatacagtag
1261 accgggaagg ccggcctgtg ctggtacact gctcagatgg ctgggaccgc acaccgcaga
1321 tcgtagccct ggccaaaata ttactggacc catattacag gacgttggag ggcttccaag
1381 tgttagtgga gtctgactgg ctggattttg ggcacaagtt tggagatcgc tgtggccacc
1441 aagagaatgt ggaggaccaa aacgaacaat gccctgtgtt cctccagtgg cttgattctg
1501 ttcatcagtt gcttaagcag ttcccctgcc tgtttgaatt taatgaagca ttcctggtaa
1561 aactggtgca acacacatac tcctgcctct acggcacctt cctggccaac aacccctgtg
1621 agcgagagaa gcgcaacatc tacaagcgga cctgctctgt gtgggcgctc cttcgagctg
1681 gcaataaaaa ctttcataac ttcctctaca cacccagctc agacatggtc ctgcatcctg
1741 tttgtcatgt ccgggccctg cacctctgga cagctgttta tctgccagca tcatctccat
1801 gcacacttgg ggaagaaaac atggatcttt acctttcccc agtggcccag agccaggagt
1861 tctctggccg ctctctggac agattaccta aaaccagatc catggatgat cttctttctg
1921 cctgtgacac aagcagcccc ctgactcgta catccagtga ccctaacctg aataaccact
1981 gtcaggaggt cagggtaggc ctggagccct ggcacagcaa tcctgaggga tcagagacaa
2041 gctttgtgga ctctggggta ggagggcctc agcaaactgt aggagaagtg ggtcttcctc
2101 ctcctctgcc cagcagccag aaagactact tgagcaataa acctttcaag agtcacaaaa
2161 gctgttctcc aagttacaaa ctgcttaata ccgcagtgcc tcgggaaatg aagagcaaca
2221 cctctgatcc tgagatcaaa gtcctagaag agactaaggg accagctcca gacccttctg
2281 cccaggatga gctgggtagg actttagatg gcatagggga gccacctgaa cattgtcctg
2341 aaacagaagc tgtcagtgca ctctccaagg tcatttctaa caagtgtgat ggagtttgta
2401 attttcctga gtcttcccag aactctccta caggtacgcc ccaacaggcc cagccagact
2461 ccatgctagg tgtgccctcc aagtgtgttc ttgatcacag cctcagcacc gtttgcaacc
2521 caccgagtgc tgcctgccaa actcctctag acccaagcac tgacttcctc aaccaagatc
2581 cctcagggtc tgtggcaagt atctcccacc aggaacaact gagttctgtg ccggatctga
2641 cccatgggga ggaagacatt ggtaaaagag gaaataatag gaatgggcag ttattggaaa
2701 atcctcgctt tgggaaaatg ccattggaat tggtccggaa gccaatttct cagagccaga
2761 tcagtgagtt ctcttttcta gggtccaact gggacagctt ccaagggatg gtgacttcat
2821 tcccaagtgg ggaggccacc cctcggcggc tgctttccta tggctgttgt agcaagaggc
2881 caaacagtaa gcagatgcgg gccacagggc cctgctttgg gggccagtgg gctcagagag
2941 aaggtgtgaa gtcacctgtc tgttctagtc attccaatgg acattgtact ggcccaggag
3001 gaaagaacca gatgtggttg tccagtcatc caaagcaagt ctctagcaca aagcccgttc
3061 cactgaactg cccttctcca gtgcctcctc tgtatttgga tgatgatgga ctcccctttc
3121 ccacggatgt gatccagcat aggttacggc aaatcgaagc agggtacaaa caagaggtgg
3181 agcagctacg tcgacaggtg cgtgagcttc agatgaggct ggacatccgt cactgctgtg
3241 cccctccagc agagcccccc atggactatg aggatgattt tacatgtttg aaggagtcag
3301 atggcagtga tactgaggat tttggctctg atcacagtga agactgcctt tcagaagcaa
3361 gctgggaacc tgttgataag aaagagactg aggtgactcg ctgggttcca gaccatatgg
3421 catcacactg ctataactgt gactgtgaat tctggttggc caaacgaaga caccattgca
3481 gaaattgtgg gaatgtattt tgtgctggat gctgccacct gaagctgccc attcctgatc
3541 agcaactcta tgacccagtt ctcgtctgta actcatgtta cgaacacatt caagtctctc
3601 gtgccaggga actcatgagc caacagctga agaaacccat tgctacagct tccagttgaa
3661 tgccggggag aaacctgtcc aattttagca ggtttgaagg gaggatcttc ttcagttgta
3721 gtttggaagg ttccttggtg tggctcatga aatcacagag ctcagagata ccatcttgag
3781 aaatcctcct tggtatcatg aaactggagc agaggaattg caatttagca ggaggtcctc
3841 tactggtgat accctcacct tggggtaatg gtcctaaccc agacccaggg tctggaagct
3901 taatgttgag ttggtgactc cagcctcttt ctcctggagg tcacaagatg atgattgcgt
3961 agatgttgcc tggtgcaaag tgccccaaac agcaatagaa aggcatatgt ataaccaaac
4021 tccaagtgat aaccagaccc atctctcctc caccttgaca aaagcagatt atagtataca
4081 aggtaggaat tcctgtccta tttgagatga actatatcct gtacctctgt gctctgtgtc
4141 tgcatgaagg ctcagccttt agaggcactc cttctagttg cattagtact gtctttctgt
4201 ggagtttggt ttgaagactg gctcagcaag tggaggtttc aatgtatttt tcagttggct
4261 catcagccag cattggtgaa tattcagttt aggggaacag ttctagggag tgagacattt
4321 ttgggagcag aggaaaactc tgctgatgtt cggtcctggc aaacattgag ttattttgag
4381 ctgtgaaggc agtcgtctct gttacacagt ggcagctctt gagttatgca ctgtgaagaa
4441 tgagaaggga aaagcaaaaa ttatccttgt gaaatatctg ctgattgtgc cctactcttt
4501 gcacctgact tttcctagtt gtcctggtgc taacacagga gctacacctt gatcctctcc
4561 tggcatgaaa ataaaacaaa ggttttcgtt gttgttgttc cattgcccat ttcccccatg
4621 ttgtctttcc cttggctgat gcctcctctg ggtcacattg cttcttatcc tgaacacttg
4681 acaccttgag ggtagaattt agcgtttggt ttttacctcc tagcatatgc tgtttggtat
4741 gtgagggttt cagtacaaat gctgctgtct atttctgtgc acttaacaat ggaacccaaa
4801 cagaagagaa taaagccttg ataccaaaat tgggaaagaa catgtgtcca tttggaccaa
4861 acgttgttgg tttttaaaaa attttatttt gtttttttgt ttttgttttt gttttttttc
4921 atcttaatat gtaccagtgg cacttaacca aaagatacag tgatatagcc atgtactgtg
4981 ggtgggacag atacagtctc cttggcctat aatgaaacca ctaggacttt atacagtttt
5041 ccttaatttg ttgacatata aatggtaaat tatatttagg cttatcctgt tttgaaatga
5101 tggtagtcat ctttcttact gctactttca tgttgctttc tagaaaacag catttcattc
5161 caaaataact aggatctgca tttagaacaa gaatcattat ttgtcctgac cttttcagtc
5221 ctacagagac gcatctgtgg ttcttttgta cttgccatag atgtaaccta aaaagttttg
5281 gcatatttag gtcagcctag cggaactttt tttttcattt aaatggagct gaataatgga
5341 gattttgtgt ctgcaaaatt cctgagatca ttgaaaaagt aacaagctgt tccttgtttc
5401 tgatacataa aattatttta agcattttat caatcattaa aatttactgc cagttgtgag
5461 tggcttttta attaacttgt ctttcattgc acttcactct gcctgttttc aaggggagta
5521 agattggtaa catttgggga gactgtatct gtctacttag cgtggctgtt ttgagggact
5581 gtcccatcag tgaacaaact gcatggcctt ggagagagac tctgggctct tggctcagat
5641 gtgttcatca aatactcctt tcagagctgt tgtgggtgta agtgacatga tgtggccaaa
5701 aatccaaact gtgcagttgc gttgtgacaa acatgcaatg tgctgtaaaa attcaataca
5761 gtttaaataa aatctctata ttagtaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
5821 aaaaaaaaaa aaaaaaaaaa
//