LOCUS BC035581 3999 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PR domain containing 4, mRNA (cDNA clone MGC:45046
IMAGE:5587364), complete cds.
ACCESSION BC035581
VERSION BC035581.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3999)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3999)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: p Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 41349473.
FEATURES Location/Qualifiers
source 1..3999
/db_xref="H-InvDB:HIT000051423"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45046 IMAGE:5587364"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3999
/gene="PRDM4"
/gene_synonym="MGC45046"
/gene_synonym="PFM1"
/db_xref="GeneID:11108"
/db_xref="HGNC:HGNC:9348"
/db_xref="MIM:605780"
CDS 239..2644
/gene="PRDM4"
/gene_synonym="MGC45046"
/gene_synonym="PFM1"
/codon_start=1
/product="PR domain containing 4"
/protein_id="AAH35581.1"
/db_xref="GeneID:11108"
/db_xref="HGNC:HGNC:9348"
/db_xref="MIM:605780"
/translation="MHHRMNEMNLSPVGMEQLTSSSVSNALPVSGSHLGLAASPTHSA
IPAPGLPVAIPNLGPSLSSLPSALSLMLPMGIGDRGVMCGLPERNYTLPPPPYPHLES
SYFRTILPGILSYLADRPPPQYIHPNSINVDGNTALSITNNPSALDPYQSNGNVGLEP
GIVSIDSRSVNTHGAQSLHPSDGHEVALDTAITMENVSRVTSPISTDGMAEELTMDGV
AGEHSQIPNGSRSHEPLSVDSVSNNLAADAVGHGGVIPMHGNGLELPVVMETDHIASR
VNGMSDSALSDSIHTVAMSTNSVSVALSTSHNLASLESVSLHEVGLSLEPVAVSSITQ
EVAMGTGHVDVSSDSLSFVSPSLQMEDSNSNKENMATLFTIWCTLCDRAYPSDCPEHG
PVTFVPDTPIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSM
EVAEWTDKAVNHIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDG
KIFFCTSQDIPPENELLFYYSRDYAQQIGVPEHPDVHLCNCGKECNSYTEFKAHLTSH
IHNHLPTQGHSGSHGPSHSKERKWKCSMCPQAFISPSKLHVHFMGHMGMKPHKCDFCS
KAFSDPSNLRTHLKIHTGQKNYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKL
FMRRQDLKQHVLIHTQERQIKCPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYL
TKYHLTRHLKTCKGPTSSSSAPEEEEEDDSEEEDLADSVGTEDCRINSAVYSADESLS
AHK"
BASE COUNT 1105 a 952 c 932 g 1010 t
ORIGIN
1 ccacgcgtcc ggacggaagg ccccaggtgt tccccgagat gccccaaccc gtggcggggt
61 gcacggccac cggccctcgg gagaagttgg gcggccccgg gcgaccccgg ggacgagtgg
121 ccgcgtcggt gcagcggttg tgagcaagat gtggtagcac gtgaccctgg aacgcaaacc
181 ctgatgcctg ttccccacca cccgagcgct cctttctctg atatttggcc ccaagccgat
241 gcatcacagg atgaatgaaa tgaacctgag tccagtgggg atggagcagc tgacttcatc
301 ctctgtgagc aatgccttgc cagtctcagg aagtcacctg ggattggctg cctcacccac
361 tcacagtgcc atccctgccc caggcctccc agtggcaatt ccaaacctgg gtccctccct
421 gagctctctg ccttctgctc tgtctttaat gctaccaatg ggtattgggg atcgaggggt
481 gatgtgtggg ttacctgaaa gaaactacac cctacctcca ccaccttacc ctcacctgga
541 gagcagttat ttcagaacca ttctacctgg cattttatct tatttagctg acagaccacc
601 tccacagtac atccacccta actctataaa tgttgatggt aatacagcat tatctatcac
661 caataaccct tcagcactag atccctatca gtccaatgga aatgttggat tagaaccagg
721 cattgtttca atagactctc gctctgtgaa cacacatggt gcccaaagtc ttcatcccag
781 tgatggccat gaggtggcct tggacacagc aatcactatg gagaacgttt ctagggttac
841 cagcccaatt tcgacagatg gaatggcaga ggagcttacg atggacggtg ttgcaggcga
901 gcattcccaa atcccaaatg gctccagaag tcatgaacct ctgtctgtgg attctgtgag
961 caacaacctt gcagcagacg ctgtaggaca tggtggtgtg atacccatgc atgggaatgg
1021 cctggagctc cctgtggtca tggagacaga ccacattgca agtcgggtca atggcatgtc
1081 tgacagtgcc ctcagtgact ccattcacac tgtggccatg agcaccaact ctgtaagcgt
1141 ggcactctct acctcacaca accttgcctc cctagaatct gtttccctcc atgaagttgg
1201 cctcagccta gaacctgtgg ctgtctcctc catcacccag gaggttgcta tggggacagg
1261 tcatgtagat gtatcttcag acagtctttc ttttgtatca ccttcactgc aaatggaaga
1321 ctccaattca aacaaggaga acatggcaac cttgtttaca atttggtgta ctctgtgtga
1381 ccgcgcctat ccctcggact gtcccgaaca tggaccagtg acttttgttc ctgacactcc
1441 aatagagagc agagcaaggc tttctctccc aaagcagctt gttctccgtc agtcaattgt
1501 gggagcagaa gttggtgtat ggactggaga aaccattcct gtgcggactt gctttggacc
1561 tctaattggc cagcagagtc actccatgga agtagcagaa tggacagaca aggcagttaa
1621 ccatatctgg aagatatacc acaatggtgt cctagaattc tgcatcatta caactgatga
1681 aaatgaatgt aattggatga tgtttgtgcg caaagccagg aaccgggaag agcagaattt
1741 ggtggcttat cctcatgatg gaaaaatctt tttctgcacc tcacaagata tccctcctga
1801 aaatgaactg cttttttatt atagccgaga ttatgctcaa cagattggtg ttcctgaaca
1861 cccagatgtg catctctgta actgtggcaa ggagtgcaat tcttacacag agttcaaagc
1921 ccatctgacc agccacatcc ataaccatct tcctacccag ggacatagcg gcagccatgg
1981 gccaagtcac agcaaagaaa ggaagtggaa gtgctcaatg tgcccccaag cttttatctc
2041 tccttccaaa cttcatgtcc actttatggg tcacatgggt atgaagcccc acaagtgtga
2101 tttctgtagc aaggctttta gtgatcccag caacctgcgg acccacctca agatacatac
2161 aggtcagaag aactacaggt gtaccttgtg tgacaagtct ttcacccaga aggctcacct
2221 ggagtcccac atggttatcc acactgggga gaagaatctt aagtgtgatt actgtgacaa
2281 gttgtttatg cggaggcagg acctcaagca gcacgtgctc atccacactc aagaacgcca
2341 gatcaagtgt cccaagtgtg ataagctgtt cttgagaaca aatcacttaa agaagcatct
2401 caattctcat gaaggaaaac gggattatgt ctgtgaaaaa tgtacaaagg cttatctaac
2461 caaataccat ctcacccgcc acctgaaaac ctgcaaaggg cccacctcca gttcgtcagc
2521 accagaggag gaagaagagg atgactcaga agaggaagat ctagcagact ctgtggggac
2581 agaagactgt aggattaaca gtgctgtgta ttcagcggat gagtctcttt ctgcacataa
2641 ataaaaggaa aagaaacaag caattctgga tgaaaatgca aatggaaaaa tacacataac
2701 cagttatcta ctataatggt ttttatataa aatggttcct gatttatttt cagccagtaa
2761 tcaaaacaga ctgggaatga ataaagcact tacagaagag tatcctaatg aaaacacttt
2821 aaaacagatt gggaaaactg agcatgtgtc ctattttaag tggtggactg ggagggaagt
2881 gtcaacttct gaggtcttta tttacatgat aatctgggag atgcatttat gcctgaatca
2941 aagctgcctt ctgctcaaac aaatcagatt tatttcacat tcttccatta ttccattttc
3001 ctgctggtcc tgtgacttgg taacattcta aacggtcctt gccccatagc catcctgatt
3061 gctgatagtg ttttatgcag actcttgtga cttatactca ccacagaatg gattgggaca
3121 cagcagcata agtgtgctac ttggcagcta gtaagtttaa agcaggacct gccttaactg
3181 ctcctggcca cttggaagtt tagggtagat cttgttttcc aaagtttcgg caggtgcctg
3241 gagggcaaat aaaaaagcag cagtcagtca gtagtcagtg atggagagaa caagaggaga
3301 gatgcctggc ctctgcccaa gaaattagct ttgatggaag cctgagcaag tcacctggtt
3361 attgtaacgt ggagatcttt gtaggtttag acatggctcc ctgtctccag taaacatcca
3421 gccattcaga caaagggggc ctggagatac agagagccca aatgcctgct ggattgtctc
3481 ctgatgagta catgtggact cacctgagga agggaaggaa gggaataatc ttttatgttt
3541 catttacctt atgaaaagtg ttaaaacatt gccaactcaa aataacatta tttaatgcat
3601 gtgcaaagtt aggtcttccc agttgtctca gtgctgagga acctcatcag agaagcatgg
3661 aagatgccaa aggatttttg gaaggtaaag aaggctgaat agtgaccaca tgggcctgtt
3721 ttcagggtcc cagcttagtt aagtcaccca tgcacctggt cattgtgtct cccgtgcaca
3781 tccagcgttt ctcagaagca gacccaccct taagttgaca ggattgatgg aacatgctct
3841 cctgctcaag gcacaacctc tgggctggag tagaggactc tggtgggaag gttttgctgc
3901 taatgtattt atggaatgaa tgtatttcat tcaaatctgt attcctctag gaaggattaa
3961 aattaaactt ttttaaaata caggaaaaaa aaaaaaaaa
//