LOCUS BC035575 4336 bp mRNA linear HUM 29-AUG-2008
DEFINITION Homo sapiens peroxisomal biogenesis factor 1, mRNA (cDNA clone
MGC:45327 IMAGE:5498274), complete cds.
ACCESSION BC035575
VERSION BC035575.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4336)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4336)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505724.
FEATURES Location/Qualifiers
source 1..4336
/db_xref="H-InvDB:HIT000051418"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45327 IMAGE:5498274"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4336
/gene="PEX1"
/gene_synonym="ZWS1"
/db_xref="GeneID:5189"
/db_xref="HGNC:HGNC:8850"
/db_xref="MIM:602136"
CDS 39..3890
/gene="PEX1"
/gene_synonym="ZWS1"
/codon_start=1
/product="peroxisomal biogenesis factor 1"
/protein_id="AAH35575.1"
/db_xref="GeneID:5189"
/db_xref="HGNC:HGNC:8850"
/db_xref="MIM:602136"
/translation="MWGSDRLAGAGGGGAAVTVAFTNARDCFLHLPRRLVAQLHLLQN
QAIEVVWSHQPAFLSWVEGRHFSDQGENVAEINRQVGQKLGLSNGGQVFLKPCSHVVS
CQQVEVEPLSADDWEILELHAVSLEQHLLDQIRIVFPKAIFPVWVDQQTYIFIQIVAL
IPAASYGRLETDTKLLIQPKTRRAKENTFSKADAEYKKLHSYGRDQKGMMKELQTKQL
QSNTVGITESNENESEIPVDSSSVASLWTMIGSIFSFQSEKKQETSWGLTEINAFKNM
QSKVVPLDNIFRVCKSQPPSIYNASATSVFHKHCAIHVFPWDQEYFDVEPSFTVTYGK
LVKLLSPKQQQSKTKQNVLSPEKEKQMSEPLDQKKIRSDHNEEDEKACVLQVVWNGLE
ELNNAIKYTKNVEVLHLGKVWIPDDLRKRLNIEMHAVVRITPVEVTPKIPRSLKLQPR
ENLPKDISEEDIKTVFYSWLQQSTTTMLPLVISEEEFIKLETKDGLKEFSLSIVHSWE
KEKDKNIFLLSPNLLQKTTIQVLLDPMVKEENSEEIDFILPFLKLSSLGGVNSLGVSS
LEHITHSLLGRPLSRQLMSLVAGLRNGALLLTGGKGSGKSTLAKAICKEAFDKLDAHV
ERVDCKALRGKRLENIQKTLEVAFSEAVWMQPSVVLLDDLDLIAGLPAVPEHEHSPDA
VQSQRLAHALNDMIKEFISMGSLVALIATSQSQQSLHPLLVSAQGVHIFQCVQHIQPP
NQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFVARDFTVLVDRAIHSRLSR
QSISTREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTI
QLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKY
IGASEQAVRDIFIRAQAAKPCILFFDEFESIAPRRGHDNTGVTDRVVNQLLTQLDGVE
GLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDV
DLQHVASVTDSFTGADLKALLYNAQLEALHGMLLSSGLQDGSSSSDSDLSLSSMVFLN
HSSGSDDSAGDGECGLDQSLVSLEMSEILPDESKFNMYRLYFGSSYESELGNGTSSDL
SSQCLSAPSSMTQDLPGVPGKDQLFSQPPVLRTASQEGCQELTQEQRDQLRADISIIK
GRYRSQSGEDESMNQPGPIKTRLAISQSHLMTALGHTRPSISEDDWKNFAELYESFQN
PKRRKNQSGTMFRPGQKVTLA"
BASE COUNT 1345 a 848 c 934 g 1209 t
ORIGIN
1 ccacgcgtcc ggcgaaccca gagcgacgct ccgggacgat gtggggcagc gatcgcctgg
61 cgggtgctgg gggaggcggg gcggcagtga ctgtggcctt caccaacgct cgcgactgct
121 tcctccacct gccgcggcgt ctcgtggccc agctgcatct gctgcagaat caagctatag
181 aagtggtctg gagtcaccag cctgcattct tgagctgggt ggaaggcagg cattttagtg
241 atcaaggtga aaatgtggct gaaattaaca gacaagttgg tcaaaaactt ggactctcaa
301 atgggggaca ggtatttctc aagccatgtt cccatgtggt atcttgtcaa caagttgagg
361 tggaacccct ctcagcagat gattgggaga tactggagct gcatgctgtt tcccttgaac
421 aacatcttct agatcaaatt cgaatagttt ttccaaaagc catttttcct gtttgggttg
481 atcaacaaac gtacatattt atccaaattg ttgcactaat accagctgcc tcttatggaa
541 ggctggaaac tgacaccaaa ctccttattc agccaaagac acgccgagcc aaagagaata
601 cattttcaaa agctgatgct gaatataaaa aacttcatag ttatggaaga gaccagaaag
661 gaatgatgaa agaacttcaa accaagcaac ttcagtcaaa tactgtggga atcactgaat
721 ctaatgaaaa cgagtcagag attccagttg actcatcatc agtagcaagt ttatggacta
781 tgataggaag cattttttcc tttcaatctg agaagaaaca agagacatct tggggtttaa
841 ctgaaatcaa tgcattcaaa aatatgcagt caaaggttgt tcctctagac aatattttca
901 gagtatgcaa atctcaacct cctagtatat ataacgcgtc agcaacctct gtttttcata
961 aacactgtgc cattcatgta tttccatggg accaggaata ttttgatgta gagcccagct
1021 ttactgtgac atatggaaag ctagttaagc tactttctcc aaagcaacag caaagtaaaa
1081 caaaacaaaa tgtgttatca cctgaaaaag agaagcagat gtcagagcca ctagatcaaa
1141 aaaaaattag gtcagatcat aatgaagaag atgagaaggc ctgtgtgcta caagtagtct
1201 ggaatggact tgaagaattg aacaatgcca tcaaatatac caaaaatgta gaagttctcc
1261 atcttgggaa agtctggatt ccagatgacc tgaggaagag actaaatata gaaatgcatg
1321 ccgtagtcag gataactcca gtggaagtta cccctaaaat tccaagatct ctaaagttac
1381 aacctagaga gaatttacct aaagacataa gtgaagaaga cataaaaact gtattttatt
1441 catggctaca gcagtctact accaccatgc ttcctttggt aatatcagag gaagaattta
1501 ttaagctgga aactaaagat ggactgaagg aattttctct gagtatagtt cattcttggg
1561 aaaaagaaaa agataaaaat atttttctgt tgagtcccaa tttgctgcag aagactacaa
1621 tacaagtcct tctagatcct atggtaaaag aagaaaacag tgaggaaatt gactttattc
1681 ttcctttttt aaagctgagc tctttgggag gagtgaattc cttaggcgta tcctccttgg
1741 agcacatcac tcacagcctc ctgggacgcc ctttgtctcg gcagctgatg tctcttgttg
1801 caggacttag gaatggagct cttttactca caggaggaaa gggaagtgga aaatcaactt
1861 tagccaaagc aatctgtaaa gaagcatttg acaaactgga tgcccatgtg gagagagttg
1921 actgtaaagc tttacgagga aaaaggcttg aaaacataca aaaaacccta gaggtggctt
1981 tctcagaggc agtgtggatg cagccatctg ttgtcctgct ggatgacctt gacctcattg
2041 ctggactgcc tgctgtcccg gaacatgagc acagtcctga tgcggtgcag agccagcggc
2101 ttgctcatgc tttgaatgat atgataaaag agtttatctc catgggaagt ttggttgcac
2161 tgattgccac aagtcagtct cagcaatctc tacatccttt acttgtttct gctcaaggag
2221 ttcacatatt tcagtgcgtc caacacattc agcctcctaa tcaggaacaa agatgtgaaa
2281 ttctgtgtaa tgtaataaaa aataaattgg actgtgatat aaacaagttc accgatcttg
2341 acctgcagca tgtagctaaa gaaactggag ggtttgtggc tagagatttt acagtacttg
2401 tggatcgagc catacattct cgactctctc gtcagagtat atccaccaga gaaaaattag
2461 ttttaacaac attggacttc caaaaggctc tccgcggatt tcttcctgcg tctttgcgaa
2521 gtgtcaacct gcataaacct agagacctgg gttgggacaa gattggtggg ttacatgaag
2581 ttaggcagat actcatggat actatccagt tacctgccaa gtatccagaa ttatttgcaa
2641 acttgcccat acgacaaaga acaggaatac tgttgtatgg tccgcctgga acaggaaaaa
2701 ccttactagc tggggtaatt gcacgagaga gtagaatgaa ttttataagt gtcaaggggc
2761 cagagttact cagcaaatac attggagcaa gtgaacaagc tgttcgggat atttttatta
2821 gagcacaggc tgcaaagccc tgcattcttt tctttgatga atttgaatcc attgctcctc
2881 ggcggggtca tgataataca ggagttacag accgagtagt taaccagttg ctgactcagt
2941 tggatggagt agaaggctta cagggtgttt atgtattggc tgctactagt cgccctgact
3001 tgattgaccc tgccctgctt aggcctggtc gactagataa atgtgtatac tgtcctcctc
3061 ctgatcaggt gtcacgtctt gaaattttaa atgtcctcag tgactctcta cctctggcag
3121 atgatgttga ccttcagcat gtagcatcag taactgactc ctttactgga gctgatctga
3181 aagctttact ttacaatgcc caattggagg ccttacatgg aatgctgctc tcgagtggac
3241 tccaggatgg aagttccagc tctgatagtg acctaagtct gtcttcaatg gtctttctta
3301 accatagcag tggctctgac gattcagctg gagatggaga atgtggctta gatcagtccc
3361 ttgtttcttt agagatgtcc gagatccttc cagatgaatc aaaattcaat atgtaccggc
3421 tctactttgg aagctcttat gaatcagaac ttggaaatgg aacctcttct gatttgagct
3481 cacaatgtct ctctgcacca agctccatga ctcaggattt gcctggagtt cctgggaaag
3541 accagttgtt ttcacagcct ccagtgttaa ggacagcttc acaagagggt tgccaagaac
3601 ttacacaaga acaaagagat caactgaggg cagatatcag tattatcaaa ggcagatacc
3661 ggagccaaag tggagaggac gaatccatga accaaccagg accaatcaaa accagactgg
3721 ctattagtca gtcacattta atgactgcac ttggtcacac aagaccatcc attagtgaag
3781 atgactggaa gaattttgct gagctatatg aaagctttca aaatccaaag aggagaaaaa
3841 atcaaagtgg aacaatgttt cgacctggac agaaagtaac tttagcataa aatatacttc
3901 tttttgattt ggttctgtta agttttttga tggcttttcc atatgttgta acaggaaaaa
3961 aatggtgtct atgaatttct tcttaattta acaaatttgg ttaatttata aaatcacaga
4021 ttggtaaatg ctataattat gtaatgatca ggattgagat taatactgta gtataaattg
4081 ggacattata acagattcca tattttattt cctaaaatct aaattcagtc tttaatgaaa
4141 taatattagc caaatggtgg aactaattta tttcttttga ggaaaagata ataaagaatg
4201 taattaaatt taaatttctt ggaattccca gttgtatatt catcaccttt gtagcatttg
4261 acaaatttta tgcttagcag cttcttcact gttttgaaat aaaatatcct attacctact
4321 gaaaaaaaaa aaaaaa
//