LOCUS BC035564 4080 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone
IMAGE:5139641), partial cds.
ACCESSION BC035564
VERSION BC035564.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4080)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4080)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 64 Row: d Column: 7.
FEATURES Location/Qualifiers
source 1..4080
/db_xref="H-InvDB:HIT000093960"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5139641"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..4080
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="IMGT/GENE-DB:17102"
/db_xref="MIM:601155"
CDS <1..3396
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/codon_start=1
/product="HMHA1 protein"
/protein_id="AAH35564.1"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="IMGT/GENE-DB:17102"
/db_xref="MIM:601155"
/translation="PRVRPYRAGRQGPQQRGRDPGIQLTELPRKDGADAVFPGPSLEP
PAGSSGVKATGTLKRPTSLSRHASAAGFPLSGAASWTLGRSHRSPLTAASPGELPTEG
AGPDVVEDISHLLADVARFAEGLEKLKECVLRDDLLEARRPRAHECLGEALRVMHQII
SKYPLLNTVETLTAAGTLIAKVKAFHYESNNDLEKQEFEKALETIAVAFSSTVSEFLM
GEVDSSTLLAVPPGDSSQSMESLYGPGSEGTPPSLDDCDAGCLPAEEVDVLLQRSEGG
VDAALLYAKNMAKYMKDLISYLEKRTTLEMEFAKGLQKIAHNCRQSVMQEPHMPLLSI
YSLALEQDLEFGHSMVQAVGTLQTQTFMQPLTLRRLEHEKRRKEIKEAWHRAQRKLQE
AESNLRKAKQGYVQRCEDHDKARFLVAKAEEEQAGSAPGAGGTATKTLDKRRRLEEEA
KNKAEEAMATYRTCVADAKTQKQELEDTKVTALRQIQEVIRQSDQTIKSATISYYQMM
HMQTAPLPVHFQMLCESSKLYDPGQQYASHVRQLQRDQEPDVHYDFEPHVSANAWSPV
MRARKSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHRAGRGHQVHKSWPLSISDSDS
GLDPGPGAGDFKKFERTSSSGTMSSTEELVDPDGGAGASAFEQADLNGMTPELPVAVP
SGPFRHEGLSKAARTHRLRKLRTPAKCRECNSYVYFQGAECEECCLACHKKCLETLAI
QCGHKKLQGRLQLFGQDFSHAARSAPDGVPFIVKKCVCEIERRALRTKGIYRVNGVKT
RVEKLCQAFENGKELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVGLAKDSL
KAEAEAKAASRGRQDGSESEAVAVALAGRLRELLRDLPPENRASLQYLLRHLRRIVEV
EQDNKMTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQARVIETLIVHYGLVFEEE
PEETPGGQDESSNQRAEVVVQVPYLEAGEAVVYPLQEAAADGCRESRVVSNDSDSDLE
EASELLSSSEASALGHLSFLEQQQSEASLEVASGSHSGSEEQLEATAREDGDGDEDGP
AQQLSGFNTNQSNNVLQAPLPPMRLRGGRMTLGSCRERQPEFV"
BASE COUNT 826 a 1286 c 1351 g 617 t
ORIGIN
1 ccacgcgtcc gcccctaccg ggcgggacgg caggggccac agcagagagg ccgggacccc
61 ggcattcagc tcacggagct gcccaggaag gatggggctg acgcggtgtt ccccggacca
121 agcctggagc cgcccgctgg gtcctccggc gtcaaggcca cagggaccct caagcggccc
181 accagcctga gccgccacgc cagcgcggct ggcttccccc tgtcgggtgc tgcctcctgg
241 acactgggcc ggagccaccg gagcccactg acagccgcca gcccgggcga gctgcccacc
301 gagggtgccg gcccggacgt cgtcgaggac atctcccatc tgctggcgga cgtggcccgc
361 ttcgctgagg gccttgagaa acttaaggag tgtgtgttgc gtgacgacct ccttgaggcc
421 cgccgcccgc gggcccacga gtgcctgggt gaggctctgc gtgtcatgca tcagatcatc
481 tccaagtacc cgctgctgaa caccgtggag acgctcaccg cagccggcac cctcattgcc
541 aaggtcaaag ccttccatta tgagagcaac aatgatctgg agaaacagga gttcgagaag
601 gccctggaga cgattgctgt ggccttcagt agcacagtgt ccgagttcct catgggtgaa
661 gtggacagca gcaccctcct agcagtgcct cctggggact cgagccagtc catggaaagc
721 ctgtatggac cgggcagtga gggcacgcct cccagcctgg atgactgtga cgccggctgc
781 ctgcccgccg aggaggtgga cgtgctgcta cagcgcagtg aggggggcgt ggatgccgca
841 ctgctgtatg ccaagaacat ggccaagtac atgaaggacc tcatcagcta cctggagaag
901 cggacgacgc tggagatgga gtttgccaag ggcctgcaga agatcgctca caactgcaga
961 cagagcgtca tgcaggagcc ccacatgccg ctcctgtcca tctactcgct ggccctggag
1021 caggacctgg agttcggcca cagcatggtg caggcggtgg gcaccttgca gacccagacc
1081 ttcatgcagc ccctgaccct gcggcggctt gaacacgaga agcgcaggaa ggagatcaag
1141 gaggcctggc accgtgccca gaggaagctg caagaggcag agtccaacct gcgcaaggcc
1201 aagcagggtt acgtgcagcg ctgcgaggac cacgacaagg ctcgcttcct cgtggccaag
1261 gcggaggagg agcaggctgg cagcgcgccg ggagcaggcg gcacggccac caagaccctg
1321 gacaagcggc ggcggctgga ggaggaggcc aagaacaagg cggaggaagc tatggccacc
1381 taccgcacct gcgtggccga cgcgaagacg cagaagcagg agctggagga taccaaggtg
1441 acggcgctgc ggcagatcca ggaggtcatc cggcagagcg accaaaccat caagtcggcc
1501 acgatctcct actaccagat gatgcatatg cagacggcgc cgctgcccgt gcacttccag
1561 atgctgtgtg agagcagcaa gctgtatgac ccaggccagc agtacgcctc ccacgtgcgc
1621 cagctgcagc gggaccagga gcccgatgtg cactacgact ttgagcccca cgtctccgcc
1681 aacgcctggt cccccgtcat gcgtgcccgg aagagcagct tcaacgtgag tgatgtggcg
1741 cggcccgagg ctgccgggag ccccccagaa gaaggcgggt gcactgaggg cacacctgcc
1801 aaggaccaca gggccgggcg aggacaccag gttcacaagt catggccgct ctcgatctca
1861 gactcggaca gtgggctgga ccccggccct ggcgcagggg actttaagaa gttcgagcgg
1921 acgtcatcca gtggtaccat gtcgtccacg gaggagctgg tggacccaga cggtggagcc
1981 ggggcttcag cctttgagca ggctgacctc aacggcatga cccccgagct gccggtggcc
2041 gtgcccagtg gaccgttccg ccacgagggg ctgtccaagg cggcccgtac tcaccggctc
2101 cggaagctcc gcacgcccgc caagtgccgc gagtgcaaca gctacgtcta cttccagggt
2161 gctgagtgtg aagagtgctg cctggcctgc cacaagaaat gtctggagac gctggccata
2221 cagtgcgggc acaagaagct gcagggccgc ctgcagctgt tcggccagga cttcagccac
2281 gcggcccgca gcgcccccga cggcgtgccc ttcatcgtca agaagtgcgt ctgcgagatc
2341 gagcggcggg cgctgcgcac caagggcatc taccgggtca atggggtaaa gacacgcgtg
2401 gagaagctgt gccaggcctt cgagaacggc aaggagctgg tcgagctgtc gcaggcctcg
2461 ccccacgaca tcagcaacgt cctcaagctc tacctgcgtc agcttcccga gccgctcatc
2521 tccttccgcc tctaccacga gctcgtaggg ctggccaagg acagcctgaa ggcagaggcc
2581 gaggccaagg cggcgtcccg gggccggcag gacggctcgg agagcgaggc agtggcggtg
2641 gccctggcag gtcggctgcg ggagctcctg cgggacctgc cgcctgagaa ccgggcctcg
2701 ctgcagtacc tgctgcgtca cctacgcagg atcgtggagg tggagcagga caacaagatg
2761 acccccggga acctgggcat cgtgttcggg cccacgctgc ttcggccacg gcccaccgag
2821 gccaccgtgt ccctctcctc cctggtggat tatccccatc aggcccgcgt catcgagact
2881 ctcatcgtcc actacggcct ggtcttcgag gaggagccgg aggagacccc cgggggccag
2941 gacgagtcat ccaaccagcg agctgaggta gtcgtccagg tgccgtacct ggaggcgggc
3001 gaggcggtgg tctacccgct gcaggaggcg gcggcggacg ggtgcagaga atcccgagtt
3061 gtgtccaacg attcggactc ggacctagag gaggcctccg agctgctgtc ctcatcggag
3121 gccagtgccc tgggccacct cagcttcctg gagcagcagc agagcgaggc cagcctagag
3181 gtggcttctg gcagccacag cggcagtgag gagcagctgg aggccacagc ccgggaggac
3241 ggggacgggg acgaggacgg cccggcccag cagctctcag gattcaacac caaccagtcc
3301 aacaacgtgc tgcaggcccc actgcccccc atgaggctcc gtggcgggcg gatgacgctg
3361 ggctcctgca gggaaaggca gccggaattc gtgtgagctg gggtggggct gggaccacag
3421 gtggcttctc tcttgcctgc tcctgtccct ccagcacgtc ccctgcacca cggcatagct
3481 taggtgcgcc gtcctggggt cgctgccgag agcgcctgga cttcgacgtc ccaccagcgg
3541 gcgcctcctc ccagaggctt ccaggagcac gagggccttg cggcacagga ctgtgccctg
3601 tgctgtcccc tgcaccccgg ctcagctgag ctggggaaca ctgctgtcgt gtgaagtcac
3661 agtggccttg ttggtgccca cagggctgtg tggatggagg aagccgtccc tgcccagtgc
3721 atcccccagg tcatcacggg gacgcaggag gcaggccctg ccctgccctc tcctcacagg
3781 tctgttgcag ggactccaga aaccattctg ggagccgtgg atgggggcgg agctggggtt
3841 tggtgcagtt tccagggtgc agtacagcag ggcctgaata ctggccctgg actccctttt
3901 ccagaacacc aggtgtggcc acctggggct caggtacaca gtggggtctc tcggaagcca
3961 ccgtgtggtt ctttcacagg cacgtttatt ttgctgaaat aaaaagtttt taatcgggaa
4021 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//