LOCUS BC035508 1231 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens protein tyrosine phosphatase-like A domain containing
1, mRNA (cDNA clone IMAGE:4764667), partial cds.
ACCESSION BC035508
VERSION BC035508.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1231)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1231)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 39 Row: f Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7705458.
FEATURES Location/Qualifiers
source 1..1231
/db_xref="H-InvDB:HIT000093949"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4764667"
/tissue_type="Primary B-Cells from Tonsils"
/clone_lib="NIH_MGC_48"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1231
/gene="PTPLAD1"
/gene_synonym="B-IND1"
/gene_synonym="HSPC121"
/db_xref="GeneID:51495"
/db_xref="HGNC:HGNC:24175"
/db_xref="IMGT/GENE-DB:24175"
/db_xref="MIM:24175"
CDS 149..>1231
/gene="PTPLAD1"
/gene_synonym="B-IND1"
/gene_synonym="HSPC121"
/codon_start=1
/product="PTPLAD1 protein"
/protein_id="AAH35508.1"
/db_xref="GeneID:51495"
/db_xref="HGNC:HGNC:24175"
/db_xref="IMGT/GENE-DB:24175"
/db_xref="MIM:24175"
/translation="MENQVLTPHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKA
QGHGAKGDNVYEFHLEFLDLVKPEPVYKLTQRQVNITVQKKVSQWWERLTKQEKRPLF
LAPDFDRWLDESDAEMELRAKEEERLNKLRLESEGSPETLTNLRKGYLFMYNLVQFLG
FSWIFVNLTVRFCILGKESFYDTFHTVADMMYFCQMLAVVETINAAIGVTTSPVLPSL
IQLLGRNFILFIIFGTMEEMQNKAVVFFVFYLWSAIEIFRYSFYMLTCIDMDWKVLTW
LRYTLGIPLYPLGCLAEAVSVIQSIPIFNETGRFSFTLPYPVKIKVRFSFFLQIYLIM
IFLGLYINFRHLYKQRRRRYGQKKKKK"
BASE COUNT 326 a 262 c 303 g 340 t
ORIGIN
1 ggcaacgagg ggtatctcga ggtgccgggt tgcaggcgct caggagcgct agggtttgag
61 gcctgctttc tgctcgcgcc agcagagcac tacctgaggc agcgaggcgc agcgagccta
121 gcctccccgc gccctgggca gtgtggccat ggagaatcag gtgttgacgc cgcatgtcta
181 ctgggctcag cgacaccgcg agctatatct gcgcgtggag ctgagtgacg tacagaaccc
241 tgccatcagc atcactgaaa acgtgctgca tttcaaagct caaggacatg gtgccaaagg
301 agacaatgtc tatgaatttc acctggagtt cttagacctt gtgaaaccag agcctgttta
361 caaactgacc cagaggcagg taaacattac agtacagaag aaagtgagtc agtggtggga
421 gagactcaca aagcaggaaa agcgaccact gtttttggct cctgactttg atcgttggct
481 ggatgaatct gatgcggaaa tggagctcag agctaaggaa gaagagcgcc taaataaact
541 ccgactggaa agcgaaggct ctcctgaaac tcttacaaac ttaaggaaag gatacctgtt
601 tatgtataat cttgtgcaat tcttgggatt ctcctggatc tttgtcaacc tgactgtgcg
661 attctgtatc ttgggaaaag agtcctttta tgacacattc catactgtgg ctgacatgat
721 gtatttctgc cagatgctgg cagttgtgga aactatcaat gcagcaattg gagtcactac
781 gtcaccggtg ctgccttctc tgatccagct tcttggaaga aattttattt tgtttatcat
841 ctttggcacc atggaagaaa tgcagaacaa agctgtggtt ttctttgtgt tttatttgtg
901 gagtgcaatt gaaattttca ggtactcttt ctacatgctg acgtgcattg acatggattg
961 gaaggtgctc acatggcttc gttacactct ggggattccc ttatatccac tgggatgttt
1021 ggcggaagct gtctcagtga ttcagtccat tccaatattc aatgagaccg gacgattcag
1081 tttcacattg ccatatccag tgaaaatcaa agttagattt tccttttttc ttcagattta
1141 tcttataatg atatttttag gtttatacat aaattttcgt cacctttata aacagcgcag
1201 acggcgctat ggacaaaaaa aaaaaaaaaa a
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