LOCUS BC035307 4768 bp mRNA linear HUM 19-JUL-2004
DEFINITION Homo sapiens pleckstrin and Sec7 domain containing 4, mRNA (cDNA
clone MGC:17283 IMAGE:4339380), complete cds.
ACCESSION BC035307
VERSION BC035307.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4768)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4768)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 12 Row: p Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: Similarity but not
identity to protein.
FEATURES Location/Qualifiers
source 1..4768
/db_xref="H-InvDB:HIT000051364"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:17283 IMAGE:4339380"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4768
/gene="PSD4"
/gene_synonym="EFA6B"
/gene_synonym="TIC"
/db_xref="GeneID:23550"
CDS 170..3253
/gene="PSD4"
/gene_synonym="EFA6B"
/gene_synonym="TIC"
/codon_start=1
/product="PSD4 protein"
/protein_id="AAH35307.1"
/db_xref="GeneID:23550"
/translation="MMGDYRLPDHPQPMEILNLYLGDSLEPHPGECPRETCSHEDPPE
PFEEQTWATDPPEPTRQNVPPWGSGVELTHLGSWVHQDGLEPCQEQTRATDPPESTRQ
DAPPWGSGVELTHLGSPSAQRDHRQNTASPGSPVNSHLPGSPKQNRSTSTQVVFWAGI
LQAQMCVLDLEEELEKTEGLKAGLKCCLPTPPVDLPGDTGLHSSPPENEDSGEDSSEP
EGEGQAWLREGTPDSSPQWGAEEESMFFSNPLFLASPCSENSASGECFSWAASDSHAG
VRTGPESPATLEPPLPEDTVLWELESEPDLGDGAAISGHCTPPFPVPIYKPHSICWAS
VAAAEGAPAAPPGHGESEGDRLGPAPSAAPCVDEALTWESGCVGSDLGPAAHPVQPWA
SLSPEGWQRGGPFWPQVTLNSQDREPSSPESESRGPGPRPSPASSQEGSPQLQHHSSG
ILPKWTLDASQSSLLETDGEQPSSLKKKEAGEAPKPGEEVKSEGTARPAETGDVQPDI
HLTSAEHENLRTPMNSSWLPGSPMPQAQSPEEGQRPPAGDKLANGVRNNKVAWNLASR
LYRLEGFRKSEVAAYLQKNNDFSRAVAEEYLSFFQFGGQSLDRALRSFLQALVLSGET
QERERILYQFSRRFHHCNPGIFPSVDSVHTLTCAIMLLNTDLHGQNIGKSMSCQEFIT
NLNGLRDGGNFPKELLKALYWSIRSEKLEWAVDEEDTARPEKAQPSLPAGKMSKPFLQ
LAQDPTVPTYKQGILARKMHQDADGKKTPWGKRGWKMFHTLLRGMVLYFLKGEDHCLE
GESLVGQMVDEPVGVHHSLATPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMSSWIA
RINLAAATHSAPPFPAAVGSQRRFVRPILPVGPAQSSLEEQHRSHENCLDAAADDLLD
LQRNLPERRGRGRELEEHRLRKEYLEYEKTRYETYVQLLVARLHCPSDALDLWEEQLG
REAGGTREPKLSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL"
BASE COUNT 1025 a 1445 c 1415 g 883 t
ORIGIN
1 gccaggaagt gctcttgggg agcccaggcc aagccatcca ttcttgggtc ctttggaggg
61 tagatatgga ttcccagttt ctccagcggc cagtgctccc cctagtccac acagtgagac
121 cgtgaaagca gatgctccgg ggcactcctg ggcagctttt gctcagtgga tgatgggtga
181 ctacagactc cctgaccacc cccagcccat ggaaattctc aacctgtact tgggagacag
241 cctggagccc cacccaggag agtgcccaag ggaaacgtgc agccatgagg atccaccgga
301 gcctttcgag gagcaaacct gggccactga ccctcctgaa cctaccagac aaaatgttcc
361 tccctggggc tccggtgtgg agctcacaca cctggggagc tgggtccatc aggacgggct
421 ggagccttgc caggagcaaa cccgggccac tgaccctcct gaatctacca gacaagatgc
481 tcctccctgg ggctccggtg tggagctcac acacctgggg agcccctctg cccagaggga
541 tcacaggcag aacacagcat caccagggtc accagtgaac agccatctac cggggagccc
601 aaagcagaac cggagcacgt ccacacaggt agtgttctgg gcaggcatcc tgcaggccca
661 gatgtgtgtc ctagacctgg aggaggagct ggagaagacg gaagggctca aggctgggct
721 gaaatgctgt ctccccacgc cccctgtgga cctccccggg gacacgggcc tgcactccag
781 cccacctgag aatgaagact caggggaaga cagcagcgag cctgagggag agggccaggc
841 atggctgaga gagggaaccc cagactcttc cccacagtgg ggagctgagg aggagagcat
901 gttcttcagc aaccccctct tcctggcgag tccttgctca gagaacagtg cttctggaga
961 gtgcttttcc tgggcggctt cagactccca tgcaggtgtg aggactggac ctgagagccc
1021 agcgactctg gagcctcccc tcccagaaga cacagtgctg tgggagctgg aaagtgagcc
1081 agatttgggg gacggcgctg ctatcagtgg gcattgtacc cctccattcc ctgtgcccat
1141 ctataaacca cactccatct gctgggcctc agtggctgcc gctgaggggg ctcctgcagc
1201 acctcctggt cacggggaga gtgagggaga taggcttggt cctgctccat ctgcagcacc
1261 gtgtgtggac gaagcattga cctgggaatc aggatgtgtc ggatctgatc ttggccctgc
1321 tgcacatcct gtgcaacctt gggcctctct cagccctgag ggctggcaga gaggaggtcc
1381 tttttggccc caggtgactc ttaactccca ggacagagag cctagcagcc cagaatctga
1441 gagcagaggc cctggtccca ggcccagccc tgcatcgtcc caggagggca gcccgcagct
1501 tcaacaccac agctcaggca ttttgcccaa gtggacacta gatgcttcac agtcttcact
1561 cttggagacg gatggggaac agccaagttc cttgaagaaa aaggaggcag gggaggcccc
1621 aaaaccaggc gaggaagtaa agagtgaagg aacagccagg cctgcagaga ctggagacgt
1681 ccagcctgac attcacctga cttctgcaga acatgagaat ctgaggacac cgatgaactc
1741 ttcttggctt cctgggagcc ctatgcccca agcacagtcc ccagaggaag gccagagacc
1801 accagctgga gacaagctag ctaatggcgt caggaacaac aaggtagcct ggaacttggc
1861 ctcacgcctc tatcgcctgg agggcttccg gaagtctgaa gtggctgcct acctgcagaa
1921 gaacaatgac tttagcaggg ctgtggctga ggagtacctg tccttcttcc agtttggagg
1981 ccagagtctg gaccgagccc tccggagctt cctccaggcc ttggtgctca gtggggagac
2041 tcaggaacgg gagcgaatcc tctaccagtt ctccagacgc ttccaccatt gcaatccggg
2101 gatcttcccc tcagtagatt ctgtacacac cttgacatgt gcaatcatgc tgcttaacac
2161 ggacctgcat ggacagaaca ttgggaagag catgagctgc caggaattca taaccaacct
2221 gaatgggctg agggatggcg ggaacttccc caaggagctg ctgaaggccc tctactggtc
2281 tatccgcagc gagaagctcg agtgggccgt ggatgaagaa gacacagcca gacctgagaa
2341 ggcccagccg tccctgccag ctggcaagat gagcaagccc ttccttcagc tggctcagga
2401 tcccacagtg cccacctaca agcagggcat cctggctcgg aaaatgcatc aagatgcaga
2461 cggcaagaag acgccatggg gcaagcgtgg ctggaagatg ttccacacct tactgcgagg
2521 gatggttctc tacttcctga agggagaaga ccactgtctg gagggggaga gcttggtggg
2581 gcagatggtg gatgagcccg tgggggtgca ccactcgctg gccacccccg ccacgcatta
2641 caccaagaag ccgcacgtct tccagctgcg cacggctgac tggcgcctct acctcttcca
2701 ggcacccact gccaaggaga tgagctcctg gatcgcgcgc atcaacttgg ctgcggccac
2761 ccactccgcg ccgcccttcc ccgccgctgt gggctcccag cgcagattcg tgcggcccat
2821 cctgcccgtg ggccccgccc agagctccct ggaggagcag catcgatccc acgagaactg
2881 cctggacgct gccgcggacg acctgctgga tctacagagg aacctgccgg agcggcgggg
2941 ccgtggccgc gagctggagg agcaccgcct gcggaaggag tacctggagt acgagaaaac
3001 ccgctacgag acctacgtgc agctgctggt ggcccgcctg cactgcccct ctgatgctct
3061 ggacctgtgg gaggagcagc tggggaggga agctggaggc actcgggagc ccaagctcag
3121 cctgaagaag tcccactcga gcccgtccct gcaccaggat gaggctccca ccacggccaa
3181 ggtgaagcgc aacatctcag agcgcagaac ctaccggaag atcatcccta agcggaaccg
3241 caatcagctg tgaagccagc accacctcag agacactgtt ccctgctcca gggtagacct
3301 gagatgaacc tccctggagg agacttattt caatgagtcc accatgacgg atgaggcacc
3361 tcctttccct gctgaaggac aaaccttgtt tccctgtggc cctcattctt gtgctccctg
3421 aagctttcct aatattgctg tgctccccac cacccccatg gcagtccctc cgcagcccca
3481 gtccctggcc acgcccaagg gaagagggag gtgaggactt gactttcctc ccagagctca
3541 gcccatgtca ccctccaggc cccagaatcc agagtggcct catttcctag acttgctgag
3601 aactcagcac ttgtttgaga accagtgctt atgtggtgtg cccttggctt ctgggggaga
3661 gcttggggca gcagaggccc ctgggcagcc cagccagggg agccacagcc ccgaggatgg
3721 tcttgctctg ggaattaggt gaccttcctg gggaggcccc aggagagtga atcagggact
3781 cttgagaaat tcctaaccag cctcctgtga cccagggagc agggtcgcta aggtcctgcc
3841 cactgagggg acagccttct gggcagggac ctcggggggc ttcaagggct ctgcacggct
3901 gtggggccct gtgcctttgt ctccttgtgt ctcctttccc ccgaagtaga tgaaacagtc
3961 tcacataccc aactgctcat caacagagca gagctgatgg catgagtgag ggctgggcgg
4021 ggtggggcct ccagagcttt gcagggaacc ctggaaccct aggaacaagg agcctttgtt
4081 ccaacagagc agagaaggag gttctctatg ttcagaccac tggagaggat agagaggtaa
4141 aaggtggcga cagtttccct taggggtctg cctggcagga gccacagctc aggagagttg
4201 tgagggatgg gacggaggct ggcgaccagg cgaggcctag gccaggctcg ggagactttt
4261 ctgtgctcct ttctacacat gccttaaacc ttccttcctg tggggtgcct ggaccccttc
4321 cccatctctg gcagctcaga gggtctctgc tgctctcccc tgggaaatcc cctcatcctg
4381 ccctctggct gcctcccagc tgggcttgtt ctctgaggga ggttccggag actcatggac
4441 ttggggctct gcctgtagga aggagtctgg gccggaggga ccagccacca ttgtctctgt
4501 tcagccaagt gtgcaagtag gctgcccgcc aagagggggc ctctgctacc cgctgctgcc
4561 tgccggctga cacactgcct ccccagcctt cctgctaggc caccctcctc ccttcccatg
4621 cttgtaacca gctctggggc ttgcacctcc acaaagtaag gttggccctt ggaggccatg
4681 tttgggtctc cggccagggc ctagggctag gccatgcacc caatgggtgc acaataaata
4741 acaggtcaac aaaaaaaaaa aaaaaaaa
//