LOCUS BC035251 3493 bp mRNA linear HUM 02-DEC-2006
DEFINITION Homo sapiens coiled-coil domain containing 40, mRNA (cDNA clone
MGC:41805 IMAGE:4838111), complete cds.
ACCESSION BC035251
VERSION BC035251.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3493)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3493)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 72 Row: m Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, GenomeScan gene prediction.
FEATURES Location/Qualifiers
source 1..3493
/db_xref="H-InvDB:HIT000093796"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:41805 IMAGE:4838111"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3493
/gene="CCDC40"
/gene_synonym="FLJ20753"
/gene_synonym="FLJ32021"
/gene_synonym="KIAA1640"
/db_xref="GeneID:55036"
/db_xref="HGNC:HGNC:26090"
CDS 25..3120
/gene="CCDC40"
/gene_synonym="FLJ20753"
/gene_synonym="FLJ32021"
/gene_synonym="KIAA1640"
/codon_start=1
/product="coiled-coil domain containing 40"
/protein_id="AAH35251.1"
/db_xref="GeneID:55036"
/db_xref="HGNC:HGNC:26090"
/translation="MAEPGGAAGRSHPEDGSASEGEKEGNNESHMVSPPEKDDGQKGE
EAVGSTEHPEEVTTQAEAAIEEGEVETEGEAAVEGEEEAVSYGDAESEEEYYYTETSS
PEGQISAADTTYPYFSPPQELPGEEAYDSVSGEAGLQGFQQEATGPPESRERRVTSPE
PSHGVLGPSEQMGQVTSGPAVGRLTGSTEEPQGQVLPMGVQHRFRLSHGSDIESSDLE
EFVSQEPVIPPGVPDAHPREGDLPVFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGS
QLVVLDPDHPLMVRFQAALKNYLNRQIEKLKLDLQELVVATKQSRAQRQELGVNLYEV
QQHLVHLQKLLEKSHDRHAMASSERRQREEELQAARALYTKTCAAANEERKKLAALQT
EMENLALHLFYMQNIDQDMRDDIRVMTQVVKKAETERIRAEIEKKKQDLYVDQLTTRA
QQLEEDIALFEAQYLAQAEDTRILRKAVSEACTEIDAISVEKRRIMQQWASSLVGMKH
RDEAHRAVLEALRGCQHQAKSTDGEIEAYKKSIMKEEEKNEKLAGILNRTETEATLLQ
KLTTQCLTKQVALQSQFNTYRLTLQDTEDALSQDQLEQMILTEELQAIRQAIQGELEL
RRKTDAAIREKLQEHMTSNKTTKYFNQLILRLQKEKTNMMTHLSKINGDIAQTTLDIT
HTSSRLDAHQKTLVELDQDVKKVNELITNSQSEISRRTILIERKQGLINFLNKQLERM
VSELGGEEVGPLELEIKRLSKLIDEHDGKAVQAQVTWLRLQQEMVKVTQEQEEQLASL
DASKKELHIMEQKKLRVGSKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEE
LEQNNRVTENEFVRSLKASERETIKMQDKLNQLSEEKATLLNQLVEAEHQIMLWEKKI
QLAKEMRSSVDSEIGQTEIRAMKGEIHRMKKYCRTTRDARRHVHEQHGTRAGTCTNNT
GRAQARARTTRDARRHVHEQHGTRAGTCTNNTGRAQARARTTRDARRHVHEHRTHTAR
A"
BASE COUNT 1012 a 931 c 1061 g 489 t
ORIGIN
1 ggcggcgtcg cctagcaacg ggaaatggcg gaaccgggcg gcgcggcggg ccggtcccat
61 ccggaagatg gatcggcttc tgagggagag aaggaaggga ataatgaaag ccacatggtg
121 tcaccaccag agaaggatga tggccagaaa ggtgaagaag ctgtcggtag cacagagcat
181 cctgaggaag tcacaaccca agcggaagct gcaattgaag agggggaggt cgagacagaa
241 ggggaagcag cagtggaagg ggaagaggag gctgtgtcct atggagatgc tgaaagcgaa
301 gaggaatatt actatacaga aacttcatcc ccggaagggc aaatcagtgc tgcagatacg
361 acttacccgt atttcagtcc tcctcaggaa ctgcctggag aggaggcata cgatagtgtt
421 agcggggagg ctggtctcca aggcttccag caagaggcca ccggtccacc agaatccaga
481 gaaaggaggg tcacctcccc agagccatcc cacggagtct taggcccgtc ggagcaaatg
541 ggccaggtca cctctgggcc agcagtgggc agattgacag gatccacaga ggagccccag
601 gggcaggtgc tcccaatggg cgtccagcac cgcttccggc tgagccacgg gagcgacatc
661 gagtcctcag acctggagga gttcgtctcg caggagccag tgatcccccc aggggtgccc
721 gatgcccacc ccagggaagg agacctgcca gtgttccagg accagatcca gcagcccagc
781 accgaggagg gggccatggc agagagagtg gagtccgagg ggagtgacga ggaagcagaa
841 gacgaagggt cccagctggt ggttttggac ccagaccacc ccctgatggt aagattccag
901 gctgccctga agaactacct gaaccgacag atcgaaaagt tgaagctgga cctccaagag
961 ctggttgtgg ctaccaagca gagccgagcc cagcggcagg agctgggggt gaatctctat
1021 gaggtgcagc agcacctggt acacctgcag aagctgctgg agaagagtca cgaccgccac
1081 gcaatggcct cgagcgagcg caggcagagg gaggaggagc tgcaggccgc ccgcgctctc
1141 tacaccaaga cctgcgcagc cgccaacgag gagcgcaaaa agttggcggc tctgcagact
1201 gagatggaga acttggccct gcatctcttc tacatgcaga acatcgacca ggacatgcgt
1261 gacgacatcc gcgtgatgac acaagtggta aagaaggccg agacggagag gatccgggca
1321 gaaatcgaga agaaaaagca ggacctgtat gtggaccagc tcaccactcg agcccagcaa
1381 ctggaagaag acattgccct gtttgaggct cagtacttgg cccaagctga ggacacccgg
1441 attttaagga aagcagtgag tgaggcctgc accgagatcg acgccatcag cgtggagaag
1501 aggcgcatca tgcagcaatg ggccagcagc ctggtgggca tgaagcaccg cgacgaggcg
1561 cacagggcgg tgctggaggc gctcagagga tgccagcatc aagccaaatc caccgacggc
1621 gagattgagg cctataagaa atccatcatg aaggaggaag aaaagaacga gaagctggcg
1681 ggcatcctga accggacaga gacggaagcc acactgctgc agaagctcac cacccagtgc
1741 ctgaccaagc aggtggccct gcagagccag ttcaatacct acaggctcac cctgcaggac
1801 acagaggatg ccctcagcca ggaccagctg gaacaaatga tactcacgga ggagttgcag
1861 gccatccgcc aagccatcca gggcgagctg gagctcagga ggaagacgga tgcggccatc
1921 cgggagaagc tgcaggagca catgacctcc aacaagacca ccaaatactt caaccagctc
1981 atcctgaggc tgcagaagga gaagaccaac atgatgacac atctttccaa aatcaacggt
2041 gacattgccc agaccaccct ggacatcaca cacaccagca gcaggctgga cgcacaccag
2101 aagaccctgg tggagctgga ccaggacgtg aagaaagtca acgagctcat caccaacagc
2161 cagagcgaga tctcccggcg cacgatcctg atcgagagga agcaagggct catcaacttc
2221 ctcaacaagc agctggagcg gatggtctcc gagctggggg gggaagaagt ggggcccctg
2281 gagcttgaaa tcaaaaggct gagcaagctg atcgacgagc acgatggcaa ggcggtccag
2341 gcccaggtga cctggctgcg cctgcagcag gagatggtca aggtgacaca ggagcaggag
2401 gagcagctgg cctccctgga cgcatccaag aaggagctcc acatcatgga gcagaagaaa
2461 ctacgagtag gaagcaagat tgagcaggag aagaaggagc agaaggagat cgagcaccac
2521 atgaaggacc tggacaacga cctgaagaag ctcaacatgt tgatgaataa aaaccggtgc
2581 agctcggagg agctggagca gaacaaccgg gtgacagaga atgagttcgt gcgctcgctg
2641 aaggcctctg agagggagac catcaagatg caggacaagc tgaaccagct cagcgaggag
2701 aaggcgaccc tcctgaatca actggtggaa gcagaacacc agattatgct ttgggagaaa
2761 aaaatccaac tggcaaaaga gatgcgttcc tcagtggatt ccgagatcgg ccagacggag
2821 atccgggcca tgaagggcga gatccacagg atgaagaaat attgcagaac aacacgggac
2881 gcgcgcaggc acgtgcacga acaacacggg acgcgcgcag gcacgtgcac gaacaacacg
2941 ggacgcgcgc aggcacgtgc acgaacaaca cgggacgcgc gcaggcacgt gcacgaacaa
3001 cacgggacgc gcgcaggcac gtgcacgaac aacacgggac gcgcgcaggc acgtgcacga
3061 acaacacggg acgcgcgcag gcacgtgcac gaacacagga cacacacagc acgtgcatga
3121 acaacacagg acacacacaa gcacgtgcat gtcatctcac aaaacgctgt tttattccta
3181 ctccatgtaa tcacagcacg ctggtatttt taaatgccgg ttgtaaccct caaactttgt
3241 gaccctctaa cgtatcccac tctgagacag tctcacacca cagaagggct cagagagcac
3301 ccccatctca tccttcacag ccgcgttgtc tctccatggt cacaattaga tttcattgcc
3361 tttaaaaggc tggtaattaa attgcaagtg gtcatcaagc taaaggttca gggccttaag
3421 gataacagta agagcagttc ataaaataaa tgggcctcac tttcaccatg ccatgccaaa
3481 aaaaaaaaaa aaa
//