LOCUS BC035083 2215 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens chromosome 6 open reading frame 165, mRNA (cDNA clone
MGC:43118 IMAGE:5260875), complete cds.
ACCESSION BC035083
VERSION BC035083.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2215)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2215)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC035083.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: d Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31343459.
FEATURES Location/Qualifiers
source 1..2215
/db_xref="H-InvDB:HIT000051329"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43118 IMAGE:5260875"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2215
/gene="C6orf165"
/gene_synonym="dJ382I10.1"
/gene_synonym="FLJ25974"
/db_xref="GeneID:154313"
/db_xref="HGNC:HGNC:21405"
CDS 93..1961
/gene="C6orf165"
/gene_synonym="dJ382I10.1"
/gene_synonym="FLJ25974"
/codon_start=1
/product="chromosome 6 open reading frame 165"
/protein_id="AAH35083.2"
/db_xref="GeneID:154313"
/db_xref="HGNC:HGNC:21405"
/translation="MPPTQAESVIRSIIREIGQECAAHGEIVSETLIAFMVKAVVLDP
SNGFNMDRTLMKSDVQNLVKLCMTRLLDTKNPSLDTIKMQVYFDMNYTNRVEFLEEHH
RVLESRLGSVTREITDNRACAKEELESLYRKIISYVLLRSGLGSPTDIKTVREVTAAL
QSVFPQAELGTFLTLSKKDKERQLKELTMIVTGIRLFNRDCGKGGEGIDDLPAVLHVA
IPATMQHIDYQLETARSQVYRYTAILEKAANDPLMRAELQPYMLKEALYNIRQYEVFL
QIILSDIITGAQEVEMMTKQLGAHLEQLKMTIKSKIAVPTSQVFPIFIALSTLWTSLQ
DETIVVGVLSNLFTHIQPFLGAHELYFPERVMQCHLNGATVKTDVCRMKEHMEDRVNV
ADFRKLEWLFPETTANFDKLLIQYRGFCAYTFAATDGLLLPGNPAIGILKYKEKYYTF
NSKDAAYSFAENPEHYIDIVREKAKKNTELIQLLELHQQFETFIPYSQMRDADKHYIK
PITKCESSTQTNTHILPPTIVRSYEWNEWELRRKAIKLANLRQKVTHSVQTDLSHLRR
ENCSQVYPPKDTSTQSMREDSTGVPRPQIYLAGLRGGKSEITDEVKVNLTRDVDET"
BASE COUNT 752 a 424 c 454 g 585 t
ORIGIN
1 gcgggcgccc aactgctccg actgtcgcgg tgagggcccc aggacagaag cagacagaca
61 cggctcatgc tgtcgattcc gatccagcca gaatgcctcc aactcaggcc gaaagtgtta
121 taaggagtat tatacgagaa ataggacaag aatgtgcagc ccatggagag attgtttctg
181 aaactctgat tgcttttatg gtgaaagctg ttgtcctgga tccaagtaat ggctttaaca
241 tggatagaac cctcatgaaa agtgatgtgc agaatcttgt taagctttgt atgactcggc
301 tattggatac taaaaatcca tccctggaca ctattaagat gcaagtctac ttcgatatga
361 attatacgaa tcgagtggaa tttctcgaag aacatcaccg ggtcctagag tctagattag
421 gctctgttac ccgagaaatt acagataaca gagcatgtgc taaagaagaa ttggaaagcc
481 tctaccggaa gattatcagc tatgtgttac tccgctctgg ccttggatcc cctacagaca
541 tcaagactgt cagagaggta acagctgctc tacagagtgt ttttcctcag gcagagcttg
601 ggacatttct aactctttct aagaaggaca aagaacgcca gctgaaagaa ctcaccatga
661 ttgttactgg aattcgttta tttaacagag actgtggaaa aggaggagaa ggcattgatg
721 atttgccagc tgttctccat gtagcaatcc cagccaccat gcagcatatt gattaccagc
781 ttgagactgc ccggagccag gtataccgct acacagccat ccttgagaag gcagccaacg
841 acccactcat gagggctgaa cttcagccat atatgttaaa agaagcgcta tataatatac
901 gacaatatga ggtcttcctt cagatcattt tgtcagatat aattactggt gctcaagaag
961 tggaaatgat gacaaaacag ttaggagccc atctggaaca actaaaaatg accataaaat
1021 caaagatagc ggtcccaaca tcacaagtct ttcctatctt cattgcactt tctactctgt
1081 ggaccagctt gcaagacgaa actattgtgg ttggtgtcct cagtaattta ttcactcaca
1141 ttcagccatt cttgggtgct cacgaactat actttcctga gagagtgatg caatgtcatc
1201 ttaatggagc gactgtgaaa actgatgtgt gtagaatgaa agaacacatg gaagatagag
1261 taaatgtggc agatttcaga aaactagaat ggcttttccc agaaacaaca gcaaattttg
1321 ataaactgtt aattcaatat cggggatttt gtgcttacac gtttgctgca acagatggtc
1381 ttctccttcc aggaaatcca gcaattggaa ttttaaaata taaagaaaaa tattacacat
1441 tcaatagtaa agatgctgca tattcatttg cagaaaatcc tgaacattat attgacatag
1501 ttagagaaaa ggccaaaaag aatacagagt taattcaact attggaactt catcaacagt
1561 ttgaaacatt tattccatat tctcagatga gagatgctga caaacattat ataaaaccaa
1621 ttacaaaatg tgaaagtagc acacagacga atacacacat actgccacca acgattgtga
1681 gatcatatga gtggaatgaa tgggaattaa gaagaaaagc tataaaattg gctaatttgc
1741 gccagaaagt tactcactca gtacaaactg atcttagtca cttgagaaga gaaaattgtt
1801 cccaagtgta ccctccaaag gacactagca cccagtccat gagggaagac agcactgggg
1861 tgcccaggcc tcagatttac ttggctggtc ttcgtggagg aaagagcgaa atcaccgatg
1921 aggtcaaggt gaacttaact agagatgtgg atgaaaccta attacagaca acgttttaaa
1981 atagatgcta ctcaattatg aacaatagca agtacttaaa ggtatattaa catctataca
2041 aattaatttt gtaggggtgg cacattcatt ggttgtgtga ctgtttattg ggttgccata
2101 ttttataaaa ctgttttctg taacacattt ttcattctgt tgaaattgaa aaataaaact
2161 gtccatttat cttttaaaaa aaaaaaaaaa aaaaaaaaga aaaaaaaaaa aaaaa
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