LOCUS BC035077 4269 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens SET and MYND domain containing 4, mRNA (cDNA clone MGC:43100 IMAGE:5260399), complete cds. ACCESSION BC035077 VERSION BC035077.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4269) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4269) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC035077.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 73 Row: c Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 46195756. FEATURES Location/Qualifiers source 1..4269 /db_xref="H-InvDB:HIT000051327" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:43100 IMAGE:5260399" /tissue_type="Brain, hippocampus" /clone_lib="NIH_MGC_95" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4269 /gene="SMYD4" /gene_synonym="KIAA1936" /gene_synonym="ZMYND21" /db_xref="GeneID:114826" /db_xref="HGNC:HGNC:21067" CDS 88..2502 /gene="SMYD4" /gene_synonym="KIAA1936" /gene_synonym="ZMYND21" /codon_start=1 /product="SET and MYND domain containing 4" /protein_id="AAH35077.1" /db_xref="GeneID:114826" /db_xref="HGNC:HGNC:21067" /translation="MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLL QPEDELFLKRLSKGYLVGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNT EDMSLCHANRSAALFHLGQYETCLKDINIAQTHGYPERLQPKIMLRKAECLVALGRLQ EASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLED AALREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPP PHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQVWELYHRTE CPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLN YGLGESEKNGNIVETPIPGCDINGKYENNYNAVFNLLPHTENHSPEHKFLCALCVSAL CRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTT IQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKG QEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQTEAHRMAAGPRWEAFCCNSCG APMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQVRVAQKLLRDGELERAVQRLSG CQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSATHLQRSLCVVEVRHGPSSVEM GHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDDEIQELQKMKSCLLDLPPT PVGPAL" BASE COUNT 1133 a 1023 c 1139 g 974 t ORIGIN 1 agtcgagggc gcagttcagg gcgcgtctga gcggttctcg aggcgttctc gcctcggtct 61 ctggcgagtg cacggatcaa aagcagcatg gatctgcctg tggatgagtg gaaatcatat 121 ctgcttcaaa agtgggcttc actcccgacg tctgttcagg tcacaatttc tacagcagag 181 accttgaggg atatctttct tcactcctct tcacttcttc aacctgagga tgagctgttt 241 ctaaaaagac tttctaaagg ttacttggtg ggaaaggact cggacgctcc tcttttctac 301 agagaagaag gaaacaaaaa atttcaggag aaagattaca caggagctgc agtgctgtac 361 tctaagggag tgtcacattc aaggcctaac actgaggaca tgtcactgtg tcatgctaac 421 cgctcggcag ccctcttcca cctgggtcag tatgagacgt gtcttaaaga cattaacata 481 gcacagacac atgggtatcc agaaaggttg caacccaaga ttatgttacg taaagcagaa 541 tgtctggtgg ccctggggag actgcaggag gcaagccaga ccatcagtga tcttgaaagg 601 aacttcacag ccacaccagc cctagcagat gtcctccctc agactctgca gagaaacctc 661 catcgtctga aaatgaagat gcaagaaaag gacagtctca cagaaagctt cccagcagct 721 ctggccaaaa cccttgagga tgcagcgctg agggaggaga atgaacaact ttccaatgcc 781 tcatcatcca tcggcttatg cgtagatcct ttaaaaggtc gctgtctcgt tgccacaaaa 841 gatattctcc caggagagct cctggtgcag gaggatgctt ttgtgagtgt tctcaaccca 901 ggagaactgc caccaccgca tcacggccta gacagcaaat gggacaccag agtcaccaat 961 ggggacctct attgtcaccg atgtttgaag cacactttgg ccacagttcc gtgtgacgga 1021 tgcagttatg ccaagtattg cagccaggag tgtttgcagc aggtctggga gctctaccac 1081 aggacagaat gtcctctggg agggctgctt ctcacactgg gtgtcttttg ccacattgcc 1141 ctgaggttga ctcttttggt gggatttgag gatgttcgca aaatcataac gaagctttgt 1201 gataagatta gtaacaagga catctgttta cctgaaagca acaatcaggt caagacactt 1261 aattatggcc taggggagag tgagaaaaat ggcaacatcg ttgagacccc aattcctgga 1321 tgcgatatta atgggaagta tgaaaataat tataatgctg tcttcaacct tttgccccac 1381 actgaaaacc atagcccaga gcacaaattc ctctgtgctc tctgtgtttc tgcactgtgc 1441 agacagctag aagcagccag tttacaggcc atcccaactg agaggattgt gaactcctct 1501 cagcttaaag cagcagtgac acctgaattg tgtcctgacg tgactatttg gggagtggcg 1561 atgctgagac acatgttaca gcttcagtgt aacgctcagg cgatgaccac catacaacac 1621 acaggaccta aagggagcat cgttaccgac agcaggcagg tgcgccttgc cacaggcatc 1681 ttccctgtta tcagcctcct gaaccactcc tgtagcccca acaccagcgt gtccttcatt 1741 agcactgtcg ccaccatccg ggcgtcacag cggattagaa aggggcaaga gattctccac 1801 tgctatgggc ctcacaagag ccggatgggg gttgccgaaa ggcagcagaa gctgaggtct 1861 cagtatttct ttgactgcgc ctgtccagct tgtcaaactg aggcacacag gatggctgca 1921 gggcccaggt gggaagcatt ctgttgcaac agttgcggag cgcccatgca gggagatgac 1981 gtgctgcgct gtggcagcag atcttgtgca gaatccgccg tcagcaggga ccacctggtc 2041 tctcggttac aggacctaca gcagcaggtc agagtggccc agaagcttct cagagatggt 2101 gaactagagc gagctgttca gcggctgtcg gggtgccagc gtgacgccga gagcttcctg 2161 tgggcagagc acgccgtggt gggagagatc gcggatggcc tggcccgggc ctgtgctgcc 2221 ttaggagact ggcaaaagtc agccacccat ctacagagga gtctctgcgt ggtggaggtt 2281 cgccacgggc cgtccagtgt tgaaatgggc catgagctct tcaaattggc ccagatcttt 2341 ttcaacgggt ttgcagtacc cgaagccctg agcacaatac agaaagctga ggaggttctg 2401 tcgctgcact gtggcccatg ggacgatgaa atccaggagc tccagaagat gaaatcctgt 2461 ttgttggact taccacccac ccctgtaggg cctgcattgt agggttccag gaggattttg 2521 acccacagaa aaggagccca tggaacacaa gttaaagagg ttttgctggc caggtatggt 2581 ggctcacgcc tgtaatccca gcactttggg aggctaaggt gggcggatca cctgatgtcg 2641 ggagttcaag accagcctgg ccaacatggt gaaaccccat ctttactaaa aatacaaaaa 2701 actagccagg cgtggtggtg ggcacctgta atcccagcta cttgggaggc tgaggcagga 2761 gaatctcttg aacccgggag gcggaggttg cagtgagccg agatcgctcc actgcactcc 2821 agcccaggtg acagtgtgag actccatctc aaaaaaaaaa ataagaggcc gggtgcggtg 2881 gctcaagcct gtaatcccag cactttggga ggccgaggca ggcagatcac gaggtcagga 2941 gatccagacc atcctggcta acacggtgaa accccgtctc tactaaaaat acaaaaaaat 3001 tagtcgggcg tggtggcgga cgcctgtatt cacagctact cgggaggttg aggcaggaga 3061 atggggtgaa cccgggagga agagcttgca gtgagccgag atcgcgccac tgcactccag 3121 cctgggtgac agagccagac tccatctcaa agaaaaaaaa aaaatattaa gaggttctgc 3181 tgccagatgt gggttctgtg ggtcgggtgt gggttctgtg ggtcgggtgt gggttctgca 3241 gaccaggtgc ggattctgtg taggttctgc aggcccagtg tagaggctca cacctgtaat 3301 cccagtactt tgagacgctg aggtgggggg atcacttgag cccaggagtt caaaaccagc 3361 ctgggcaata tagtgagacc gtatcactac aaaaaagttt ttttagttca ccgagcatgg 3421 tggcacatgc ctgtagtccc acctactcga gaagctgaga tagggtcacc tgagcctggt 3481 aggctgaggc tgcagtgagc caagatcgca ctactgcact ccagcctggg tgacagagta 3541 agaccctgtc tcaacaaaaa aataacaggt tctgttgctg ctgagctttc gtcaggaaga 3601 taagactttc ccaacagtcc gaagcctagg atatgagggc tgaggaggac tcaaaccgtt 3661 gcagtcagag agacacctat tttggtgaat attttttgaa atagttaagt ggcctccagt 3721 acaaactccc agttcccaga aaagacttaa aactagtatc tggagattcc aagtccttta 3781 aaaggatttt agctgatctg caggcatctg gatgttagcc tggggttttg gctggattcc 3841 acctcgctca gtgatgatag tctgtttccc tggaacattc ctgtggtttt agtagtaatg 3901 agatgtgtgc accactccag tgggaactga agctcttagt agttacattg taattaaaaa 3961 agaattataa aacaagaaat cagcaagcct gcttacctcc agagacacac cgttccactt 4021 acagtatcta gcttcctcga ctcctttgtt aaaatcgtgg agtatgaacc gtgaccagag 4081 aagtaaatat ggagcagttt tattgagcag tttcctccag ggatgacggc tgtcagtgtg 4141 tttcctgcca gttttccagt ccttactctc tgcccttcat tctgtactct tggcagagtc 4201 agtaaccaac cactaataaa atcaaagttg tagtaaaaaa aaaaaaaaaa aagaaaaaaa 4261 aaaaaaaaa //