LOCUS BC035077 4269 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SET and MYND domain containing 4, mRNA (cDNA clone
MGC:43100 IMAGE:5260399), complete cds.
ACCESSION BC035077
VERSION BC035077.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4269)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4269)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC035077.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 73 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46195756.
FEATURES Location/Qualifiers
source 1..4269
/db_xref="H-InvDB:HIT000051327"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:43100 IMAGE:5260399"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4269
/gene="SMYD4"
/gene_synonym="KIAA1936"
/gene_synonym="ZMYND21"
/db_xref="GeneID:114826"
/db_xref="HGNC:HGNC:21067"
CDS 88..2502
/gene="SMYD4"
/gene_synonym="KIAA1936"
/gene_synonym="ZMYND21"
/codon_start=1
/product="SET and MYND domain containing 4"
/protein_id="AAH35077.1"
/db_xref="GeneID:114826"
/db_xref="HGNC:HGNC:21067"
/translation="MDLPVDEWKSYLLQKWASLPTSVQVTISTAETLRDIFLHSSSLL
QPEDELFLKRLSKGYLVGKDSDAPLFYREEGNKKFQEKDYTGAAVLYSKGVSHSRPNT
EDMSLCHANRSAALFHLGQYETCLKDINIAQTHGYPERLQPKIMLRKAECLVALGRLQ
EASQTISDLERNFTATPALADVLPQTLQRNLHRLKMKMQEKDSLTESFPAALAKTLED
AALREENEQLSNASSSIGLCVDPLKGRCLVATKDILPGELLVQEDAFVSVLNPGELPP
PHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYCSQECLQQVWELYHRTE
CPLGGLLLTLGVFCHIALRLTLLVGFEDVRKIITKLCDKISNKDICLPESNNQVKTLN
YGLGESEKNGNIVETPIPGCDINGKYENNYNAVFNLLPHTENHSPEHKFLCALCVSAL
CRQLEAASLQAIPTERIVNSSQLKAAVTPELCPDVTIWGVAMLRHMLQLQCNAQAMTT
IQHTGPKGSIVTDSRQVRLATGIFPVISLLNHSCSPNTSVSFISTVATIRASQRIRKG
QEILHCYGPHKSRMGVAERQQKLRSQYFFDCACPACQTEAHRMAAGPRWEAFCCNSCG
APMQGDDVLRCGSRSCAESAVSRDHLVSRLQDLQQQVRVAQKLLRDGELERAVQRLSG
CQRDAESFLWAEHAVVGEIADGLARACAALGDWQKSATHLQRSLCVVEVRHGPSSVEM
GHELFKLAQIFFNGFAVPEALSTIQKAEEVLSLHCGPWDDEIQELQKMKSCLLDLPPT
PVGPAL"
BASE COUNT 1133 a 1023 c 1139 g 974 t
ORIGIN
1 agtcgagggc gcagttcagg gcgcgtctga gcggttctcg aggcgttctc gcctcggtct
61 ctggcgagtg cacggatcaa aagcagcatg gatctgcctg tggatgagtg gaaatcatat
121 ctgcttcaaa agtgggcttc actcccgacg tctgttcagg tcacaatttc tacagcagag
181 accttgaggg atatctttct tcactcctct tcacttcttc aacctgagga tgagctgttt
241 ctaaaaagac tttctaaagg ttacttggtg ggaaaggact cggacgctcc tcttttctac
301 agagaagaag gaaacaaaaa atttcaggag aaagattaca caggagctgc agtgctgtac
361 tctaagggag tgtcacattc aaggcctaac actgaggaca tgtcactgtg tcatgctaac
421 cgctcggcag ccctcttcca cctgggtcag tatgagacgt gtcttaaaga cattaacata
481 gcacagacac atgggtatcc agaaaggttg caacccaaga ttatgttacg taaagcagaa
541 tgtctggtgg ccctggggag actgcaggag gcaagccaga ccatcagtga tcttgaaagg
601 aacttcacag ccacaccagc cctagcagat gtcctccctc agactctgca gagaaacctc
661 catcgtctga aaatgaagat gcaagaaaag gacagtctca cagaaagctt cccagcagct
721 ctggccaaaa cccttgagga tgcagcgctg agggaggaga atgaacaact ttccaatgcc
781 tcatcatcca tcggcttatg cgtagatcct ttaaaaggtc gctgtctcgt tgccacaaaa
841 gatattctcc caggagagct cctggtgcag gaggatgctt ttgtgagtgt tctcaaccca
901 ggagaactgc caccaccgca tcacggccta gacagcaaat gggacaccag agtcaccaat
961 ggggacctct attgtcaccg atgtttgaag cacactttgg ccacagttcc gtgtgacgga
1021 tgcagttatg ccaagtattg cagccaggag tgtttgcagc aggtctggga gctctaccac
1081 aggacagaat gtcctctggg agggctgctt ctcacactgg gtgtcttttg ccacattgcc
1141 ctgaggttga ctcttttggt gggatttgag gatgttcgca aaatcataac gaagctttgt
1201 gataagatta gtaacaagga catctgttta cctgaaagca acaatcaggt caagacactt
1261 aattatggcc taggggagag tgagaaaaat ggcaacatcg ttgagacccc aattcctgga
1321 tgcgatatta atgggaagta tgaaaataat tataatgctg tcttcaacct tttgccccac
1381 actgaaaacc atagcccaga gcacaaattc ctctgtgctc tctgtgtttc tgcactgtgc
1441 agacagctag aagcagccag tttacaggcc atcccaactg agaggattgt gaactcctct
1501 cagcttaaag cagcagtgac acctgaattg tgtcctgacg tgactatttg gggagtggcg
1561 atgctgagac acatgttaca gcttcagtgt aacgctcagg cgatgaccac catacaacac
1621 acaggaccta aagggagcat cgttaccgac agcaggcagg tgcgccttgc cacaggcatc
1681 ttccctgtta tcagcctcct gaaccactcc tgtagcccca acaccagcgt gtccttcatt
1741 agcactgtcg ccaccatccg ggcgtcacag cggattagaa aggggcaaga gattctccac
1801 tgctatgggc ctcacaagag ccggatgggg gttgccgaaa ggcagcagaa gctgaggtct
1861 cagtatttct ttgactgcgc ctgtccagct tgtcaaactg aggcacacag gatggctgca
1921 gggcccaggt gggaagcatt ctgttgcaac agttgcggag cgcccatgca gggagatgac
1981 gtgctgcgct gtggcagcag atcttgtgca gaatccgccg tcagcaggga ccacctggtc
2041 tctcggttac aggacctaca gcagcaggtc agagtggccc agaagcttct cagagatggt
2101 gaactagagc gagctgttca gcggctgtcg gggtgccagc gtgacgccga gagcttcctg
2161 tgggcagagc acgccgtggt gggagagatc gcggatggcc tggcccgggc ctgtgctgcc
2221 ttaggagact ggcaaaagtc agccacccat ctacagagga gtctctgcgt ggtggaggtt
2281 cgccacgggc cgtccagtgt tgaaatgggc catgagctct tcaaattggc ccagatcttt
2341 ttcaacgggt ttgcagtacc cgaagccctg agcacaatac agaaagctga ggaggttctg
2401 tcgctgcact gtggcccatg ggacgatgaa atccaggagc tccagaagat gaaatcctgt
2461 ttgttggact taccacccac ccctgtaggg cctgcattgt agggttccag gaggattttg
2521 acccacagaa aaggagccca tggaacacaa gttaaagagg ttttgctggc caggtatggt
2581 ggctcacgcc tgtaatccca gcactttggg aggctaaggt gggcggatca cctgatgtcg
2641 ggagttcaag accagcctgg ccaacatggt gaaaccccat ctttactaaa aatacaaaaa
2701 actagccagg cgtggtggtg ggcacctgta atcccagcta cttgggaggc tgaggcagga
2761 gaatctcttg aacccgggag gcggaggttg cagtgagccg agatcgctcc actgcactcc
2821 agcccaggtg acagtgtgag actccatctc aaaaaaaaaa ataagaggcc gggtgcggtg
2881 gctcaagcct gtaatcccag cactttggga ggccgaggca ggcagatcac gaggtcagga
2941 gatccagacc atcctggcta acacggtgaa accccgtctc tactaaaaat acaaaaaaat
3001 tagtcgggcg tggtggcgga cgcctgtatt cacagctact cgggaggttg aggcaggaga
3061 atggggtgaa cccgggagga agagcttgca gtgagccgag atcgcgccac tgcactccag
3121 cctgggtgac agagccagac tccatctcaa agaaaaaaaa aaaatattaa gaggttctgc
3181 tgccagatgt gggttctgtg ggtcgggtgt gggttctgtg ggtcgggtgt gggttctgca
3241 gaccaggtgc ggattctgtg taggttctgc aggcccagtg tagaggctca cacctgtaat
3301 cccagtactt tgagacgctg aggtgggggg atcacttgag cccaggagtt caaaaccagc
3361 ctgggcaata tagtgagacc gtatcactac aaaaaagttt ttttagttca ccgagcatgg
3421 tggcacatgc ctgtagtccc acctactcga gaagctgaga tagggtcacc tgagcctggt
3481 aggctgaggc tgcagtgagc caagatcgca ctactgcact ccagcctggg tgacagagta
3541 agaccctgtc tcaacaaaaa aataacaggt tctgttgctg ctgagctttc gtcaggaaga
3601 taagactttc ccaacagtcc gaagcctagg atatgagggc tgaggaggac tcaaaccgtt
3661 gcagtcagag agacacctat tttggtgaat attttttgaa atagttaagt ggcctccagt
3721 acaaactccc agttcccaga aaagacttaa aactagtatc tggagattcc aagtccttta
3781 aaaggatttt agctgatctg caggcatctg gatgttagcc tggggttttg gctggattcc
3841 acctcgctca gtgatgatag tctgtttccc tggaacattc ctgtggtttt agtagtaatg
3901 agatgtgtgc accactccag tgggaactga agctcttagt agttacattg taattaaaaa
3961 agaattataa aacaagaaat cagcaagcct gcttacctcc agagacacac cgttccactt
4021 acagtatcta gcttcctcga ctcctttgtt aaaatcgtgg agtatgaacc gtgaccagag
4081 aagtaaatat ggagcagttt tattgagcag tttcctccag ggatgacggc tgtcagtgtg
4141 tttcctgcca gttttccagt ccttactctc tgcccttcat tctgtactct tggcagagtc
4201 agtaaccaac cactaataaa atcaaagttg tagtaaaaaa aaaaaaaaaa aagaaaaaaa
4261 aaaaaaaaa
//