LOCUS BC035017 4577 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens sodium channel, voltage-gated, type IV, beta, mRNA
(cDNA clone MGC:33513 IMAGE:4817294), complete cds.
ACCESSION BC035017
VERSION BC035017.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4577)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4577)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC035017.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: f Column: 6.
FEATURES Location/Qualifiers
source 1..4577
/db_xref="H-InvDB:HIT000051303"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33513 IMAGE:4817294"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4577
/gene="SCN4B"
/db_xref="GeneID:6330"
/db_xref="MIM:608256"
CDS 474..830
/gene="SCN4B"
/codon_start=1
/product="SCN4B protein"
/protein_id="AAH35017.1"
/db_xref="GeneID:6330"
/db_xref="MIM:608256"
/translation="MNNISIVLRDLEFSDTGKYTCHVKNPKENNLQHHATIFLQVVDR
LEEVDNTVTLIILAVVGGVIGLLILILLIKKLIIFILKKTREKKKECLVSSSGNDNTE
NGLPGSKAEEKPPSKV"
BASE COUNT 1050 a 1217 c 1226 g 1084 t
ORIGIN
1 agtcctttcc aggggagaaa tggagaatga tggagggtgg cccaggcggt gctgattgga
61 gtagacagcc atcctcccga ggttggcact gagggtgata gagacctacc tgcctggcca
121 agctactccg ccctgcctaa gcatcccctt ccagagctcc aggctggtgg ggttttatta
181 agggaggcgg tgctccttac acaggcctct tcctgctccc cgtaaccctg tcgctggagg
241 tgtctgtggg aaaggccacc tacatctacg ctgtcaatgg cacggagatc ctgctgccct
301 gcaccttctc cagctgcttt ggcttcgagg acctccactt ccggtggacc tacaacagca
361 gtgacgcatt caagattctc atagagggga ctgtgaagaa tgagaagtct gaccccaagg
421 tgacgttgaa agacgatgac cgcatcactc tggtaggctc tactaaggag aagatgaaca
481 acatttccat tgtgctgagg gacctggagt tcagcgacac gggcaaatac acctgccatg
541 tgaagaaccc caaggagaat aatctccagc accacgccac catcttcctc caagtcgttg
601 atagactgga agaagtggac aacacagtga cactcatcat cctggctgtc gtgggcgggg
661 tcatcgggct cctcatcctc atcctgctga tcaagaaact catcatcttc atcctgaaga
721 agactcggga gaagaagaag gagtgtctcg tgagctcctc ggggaatgac aacacggaga
781 acggcttgcc tggctccaag gcagaggaga aaccaccttc aaaagtgtga gccctgcttc
841 gggctgagca gctgcaggga gccccctttc tgatgatgaa actgatgctt gagccccgac
901 cgtagaaccc acgtgcctga gacatctgct gcttggctca aactgtagtc tttccgggca
961 caagaaacca gagtcctgcc cagcctgccc atccccttcc cagtcagggc tccccaggga
1021 caagggatgg ccaggggagg gggtctgtgg aagattcagg agaaagaaag gagaggctag
1081 ggtggtgtgg aggggctggt cccctgacac ctgggcagat ggggtctcct tcagtctccc
1141 taccctgcac aagcagggcc ttgattttcc tccaggcttc tcttcacaag agactgggag
1201 gatccgtaag ggatgtccta agagctgcac cctggagatg gggtgtagga agaagtggct
1261 tcctttggag gtgggagtgg gctggaggcc tctggagaag acctggggtg ggggctgatg
1321 ggggcaggcc cacagtgaga gactgcctct gcttcatagg ataccagatc ccccacagtc
1381 ttccaagtag gaaacttcct ttcccctgcc ccgggaccct atctgcctat cccctcccct
1441 gctcagagtt tttaagccct ctcaaccagg gctggccacc ctggtcttga gggttcctgg
1501 ccacctagcc tgctcctctg ctctctgggt tactgagggg ctcaggaagg ggcccctcga
1561 gccttcctgg agtacccgag tgctccctat gcctttccaa gcatttctac ttggagaatt
1621 gggccacaga ggtagtgagc cggtgtcctg ggcctctggg atgcccgccc cattgctgcc
1681 aatgctggca gcccctcccc tggcatggca ggaccatcgc cactctgggc actcctgagc
1741 ccagctctcc cctgcttctc cccctcctac ctgagaggct gcaccctcca acctcccatt
1801 ggctcgctcc cccccgccca ccgtgccctc catcacgccc tgcccccagg gtggttcatt
1861 tcccagccct gggtcaaggg cctgccttcg cctcagggac tctcttcctt tggatgaggg
1921 ggtccttggg tttcccagct gcttcctgct cagctgggcc accccctccc accctggggt
1981 tggggaggag cagggagtgg gtgcccacag ttttcctttg cttctcccag agctggtttg
2041 cacagccctt gtgtgtgggg ctagaatgtg ccttagtcct gaatcctagc ccttaccccc
2101 atcctctcta gacggtatgt cctgacataa cagcagagtc tggtgtggtg ctggtgaggg
2161 ttcgccagcc ctcccctccc cagggtcata gagggggcca tgaggctgga attggccagt
2221 gactgaatct tggagatgtc ggccaggtgc tcccattggg gtttctagcc tgccctaggg
2281 ggaggtggtg atgttgggag tgggatctcc tgagtccttg ttgggcagaa ttggtgaggc
2341 cagggatggc agggaaaagt ggtaacaagc ctctctgccc atctacttcc aatccctctc
2401 tcccttactg attttttgat gccctgtctt ctgggcccct aggagggatg agagaggagt
2461 agcccccttt ttcagagagt ttggggtcta cctcagagct ctccctgtca aaaagcagct
2521 gcaagcctcg caagggtgga gtggggggag actgaggacc agtagtacct gcagggtgcc
2581 cgtggctgtg gccagtgtcc cttagccaac ctgctgggct caccagttcc ccgtctgatc
2641 tgcctgtgcg cctcccattc ttctctaccc agaacctgtc atgggctggg gctcagattt
2701 tcctggcttt gggagcagac agaccagagc caccagccat tcagaaaact tcttatagct
2761 accttcatgc aaaactgttt tcttcttcct tctcaatggt gacatttgaa gaggcagagc
2821 accttggggc tcctccttct gtcttaagag aaagccaagg cacgtagagt agggagaaga
2881 agggcaccat cctctctttc ctccccaggg tctactgctg atttctagat ggatcatgca
2941 gcttctctca gctcagctct ttccatctac caaatgggtg taataatact tacctacctc
3001 acaggactgt tgtgaggctt ggcaagtttt gtctaaaaac atctttttgg cttggaaagg
3061 gatctgggaa gccaggtatt aattgcaggg atagttccaa gtctgtcctg tcttcatctc
3121 tgtgtcccat ctctacaacc cacatacaga cacacacact ctctctctct ttctttccat
3181 cccacccccc ttggaattat ttagtctttg caatattaga aaccttgact ctgatgctta
3241 aagcttcttg tccatggctt ttgtttgatg gttttcaata gaggtgactg agattgtagg
3301 gggggcattt ttggttgccc ccatgcgtgg gggcactact aagaatgcta aacttagtcc
3361 ccacaacaaa gaatcatcct gtcccatgtc aacattatac ccatggagaa acactggcat
3421 ggatttgcac taggatgtat atgggcaaag ctatcttccc caagtggaac ctcagtgcat
3481 gcaaatctct gatggtggct tccagggctt gtgggctaga gagagccact tacaaagtcg
3541 atcttgagag acctggccac atgcagctgg gctgagtgat gtcagcgaga ctaaagacaa
3601 agttctgagc tcctcatcaa ctacaaaata tgaaatcagc attccaggtt ctgggcttct
3661 ccccatgtcg taattgaaca gaaggcagcc cgaataaacc cctgatgtta gagaggcctg
3721 gggagagcag ccgatggggc tcagactaca tatggcaggc cgatcagagc tcttgtggag
3781 cgagggcttg agagcatgct tgtgagatgg caggaggtgg ggtgtgcttg tgtggagtgt
3841 gcgtgtgcag gcagtgtggg tgcatggcag cgtaactgtg gagcggatgg gctctgcatg
3901 taaggggtga tgcatgatgg gcagatgctg gacatttgag gagccgtctt tcttggcctg
3961 agctatgcct gttgaggcat ctggagactg agaaagaatc aaaggcagag aagaccagcc
4021 gtgctcctgc attccgtcac tccatgactt catctcagtg tcacagacag ctgccatcag
4081 agggctggca gtagggagtt ccaggagcgg ggacttctcg ggaaaatcct ataacttgct
4141 ttactttact ttgtcccagg ttggagtccc taccctccca cgtcccacct aatatgcagt
4201 gcttttgact atcttatgca tggtttattc ctctggcttg gatgacaaca atacccatag
4261 tcaattttcc tatgtaacta tagatcaaat gatgcaacaa caggccttgg gaggcctcag
4321 gtgtgcgagt gcctctggga ggcgcagatg cccacacagc cagcactgac ttgtgttcga
4381 gcacagaacg gatataatca gtctggcctc tacaacaagt tttgcattgt agaattgtat
4441 ttagctttgc cttggatgaa atagaaatta tgtttaataa aaaaaaaaaa aaaaaaaaaa
4501 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4561 aaccccaaaa aaaaaaa
//