LOCUS BC035013 4279 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens RAB11 family interacting protein 5 (class I), mRNA
(cDNA clone MGC:33435 IMAGE:5269818), complete cds.
ACCESSION BC035013
VERSION BC035013.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4279)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4279)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: p Column: 17.
FEATURES Location/Qualifiers
source 1..4279
/db_xref="H-InvDB:HIT000051301"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33435 IMAGE:5269818"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4279
/gene="RAB11FIP5"
/gene_synonym="DKFZP434H018"
/gene_synonym="GAF1"
/gene_synonym="KIAA0857"
/gene_synonym="pp75"
/gene_synonym="RIP11"
/db_xref="GeneID:26056"
/db_xref="HGNC:HGNC:24845"
/db_xref="MIM:605536"
CDS 168..2126
/gene="RAB11FIP5"
/gene_synonym="DKFZP434H018"
/gene_synonym="GAF1"
/gene_synonym="KIAA0857"
/gene_synonym="pp75"
/gene_synonym="RIP11"
/codon_start=1
/product="RAB11 family interacting protein 5 (class I)"
/protein_id="AAH35013.1"
/db_xref="GeneID:26056"
/db_xref="HGNC:HGNC:24845"
/db_xref="MIM:605536"
/translation="MALVRGAEPAAGPSRWLPTHVQVTVLRARGLRGKSSGAGSTSDA
YTVIQVGREKYSTSVVEKTHGCPEWREECSFELPPGALDGLLRAQEADAGPAPWAASS
AAACELVLTTMHRSLIGVDKFLGQATVALDEVFGAGRAQHTQWYKLHSKPGKKEKERG
EIEVTIQFTRNNLSAMFDLSMKDKPRSPFSKIRDKMKGKKKYDLESASAILPSSAIED
PDLGSLGKMGKAKGFFLRNKLRKSSLTQSNTSLGSDSTLSSASGSLAYQGPGAELLTR
SPSRSSWLSTEGGRDSAQSPKLFTHKRTYSDEANQMRVAPPRALLDLQGHLDAASRSS
LCVNGSHIYNEEPQGPVRHRSSISGSLPSSGSLQAVSSRFSEEGPRSTDDTWPRGSRS
NSSSEAVLGQEELSAQAKVLAPGASHPGEEEGARLPEGKPVQVATPIVASSEAVAEKE
GARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEKGGPILGASPHHSSSGEGKAKSSW
FGLREAKDPTQKPSPHPVKPLSAAPVEGSPDRKQSRSSLSIALSSGLEKLKTVTSGSI
QPVTQAPQAGQMVDTKRLKDSAVLDQSAKYYNLTHDELISLLLQRERELSQRDEHVQE
LESYIDRLLVRIMETSPTLLQIPPGPPK"
BASE COUNT 826 a 1289 c 1267 g 897 t
ORIGIN
1 agcgggtgag gcggggaggc ggcggccggt cggcccggcc cagcccagcc cgcagctgcg
61 gcggcgctca gagttggttc ctgaccgcct tctgccgcgg ccgggtttgt caccaggtcc
121 tggggtctgc accggctcgg ccagacctcg ccccccgctt ctccgccatg gccctggtgc
181 ggggcgcgga gccggcggcg gggccttccc gctggctgcc cacgcacgtc caggtgacgg
241 tgctgcgggc ccgcgggctg cggggcaaga gctcgggagc gggcagcacc agcgacgcgt
301 acacggtgat ccaggtgggc cgcgagaagt acagtacgtc ggtggtggag aagacgcacg
361 gctgtcccga gtggcgtgag gagtgctcct tcgagctgcc gccgggggcc ctggatggcc
421 tgctgcgggc gcaggaggcc gacgcgggcc cggcgccctg ggccgcgagc tccgccgccg
481 cctgcgagct ggtgctcacc accatgcacc gctcgctcat cggcgtcgac aagttcctgg
541 gccaggccac ggtggcgctg gacgaggtct tcggcgcagg ccgcgcccag cacacgcagt
601 ggtacaagct gcactccaag ccaggcaaga aggagaagga acgcggcgag attgaagtca
661 ccatccagtt cacgcgcaac aacctgagcg ccatgtttga cctgtccatg aaggacaagc
721 caaggtctcc cttcagcaag atcagggaca agatgaaggg caagaagaag tatgatctgg
781 aatctgcctc tgccatcctc ccaagcagcg ccatagagga tcctgacctg ggcagcctgg
841 gcaagatggg caaagccaaa ggcttcttcc tccgcaacaa gctgcgcaag tcgtccctga
901 cccagtccaa cacctcgctg ggctcggaca gcaccctgtc ctcagccagc gggagcttgg
961 cctaccaggg acctggcgcc gaactcctca cccgctcacc aagccgtagc agctggctgt
1021 ccactgaagg gggcagggac tctgcacagt cccccaagct gttcacccat aagaggacct
1081 acagcgatga ggccaaccag atgcgagtgg ctcctcctcg ggcccttctg gaccttcagg
1141 gccacctgga tgctgcctcc cgctcttcgc tctgtgtcaa tgggagccac atttacaatg
1201 aggagcccca gggccctgtg cggcaccgca gctccatctc gggctcgctt ccatcctctg
1261 gctccttgca agctgtctct tcccggttct ccgaggaggg gcctcgttcc acagatgaca
1321 cctggcccag aggcagtcgt agcaacagca gctcagaggc agtgcttgga caggaggagc
1381 tgagtgctca ggctaaagtc ctggcccctg gggccagcca ccctggagag gaggaggggg
1441 cccggctacc agagggcaag ccagtccagg ttgccacacc catagtggcc tcctctgagg
1501 ctgtggcaga gaaggaggga gcccggaagg aggaacgcaa gccccggatg ggtctcttcc
1561 accaccacca ccaaggccta agtcggagcg agttgggtcg ccgaagctct ctgggggaaa
1621 aggggggtcc catcctgggg gcctccccac atcactcatc cagtggggag ggaaaggcca
1681 agagtagctg gtttggcttg agagaagcca aggacccgac tcagaaaccc agtccccacc
1741 ccgtgaagcc cctcagtgcc gcccctgtgg agggcagccc cgacaggaag cagtcccgct
1801 ccagtctgag catagccctg agcagtgggc tggagaagct caaaacagtc acatctggga
1861 gcattcagcc tgtgacccag gccccccagg ctggccagat ggtggacacc aaaaggctga
1921 aggactcagc tgtgctggac cagtcggcca agtactacaa cctgacccac gatgagctca
1981 tcagcctgct cctgcagcgg gagcgggagc tgagccagcg ggacgagcat gtgcaggagc
2041 tggagagcta catcgaccgg ctgctggtgc ggatcatgga gacctcaccc acgctgctgc
2101 agatcccccc gggccccccc aaatagcctt cctcacccta cccccaggag ggttggcatg
2161 gacctattgc tgcctgccct ctctcctcct gaactctctc atctgcagtg gggcatcgtc
2221 tgtcttgcct tgtcactcct tgctcctctc cctcctgcct caactggggc tgctggaagg
2281 gggccctctg gattcccttt ggaggcatca ggttctgtgc acaacttgtg tgtctttggg
2341 agccctgggt ctttcccacc tgcctgtttt catatccctc agctttgggg gccccaggga
2401 attggaactc ttcccccaag acagagcagg ggtgaactgt agcttgatgc agtaatctgg
2461 gacaagactg gttgctagca catactttat tatcccccaa ggatggtcag ccatttcttc
2521 ccacagccaa agccccatcc ccttcatttc cctccagtcc ctggaggggc ttctagtatt
2581 actgggacaa tgaccacgct gcctgtttgt ctgtgagtta cgggcaacca gcctcttcag
2641 cctcacaccc attcccctga gagcaagaag cctgtgtggt ctgggccagt ctctgccatg
2701 tcctgagtct gcttcagtct ggagctgttt gtggggcgag tgccatgtgg acagtggtgg
2761 atgatgtgtg tgcttcaggc tgctccctga cccctctgac ctttccacga gtgtcacatg
2821 ggaatgtgtg gggcgcaggg gcgggtgcgg agagagcacc tttttgcttt tcgagctctt
2881 gaccacctcc aatgtgtagg tccctccagg ctggggcttg ggactgctta tgatttgggg
2941 atcaagcctc catgtctatt cttgttgcct gtccagatgc caaaactctg tgttgctgca
3001 gggtttgaac ttttggaaac caattaaaat gtgcctttgg tgggcggggt caagagcccc
3061 tggatgtcga cctctcccgc tgtgtggcgt ccccctccca cctgttgaat acatagggat
3121 ggctctctca gggccctggg aatgggaatg gacagcactg ctgtgggctg ttcccctccc
3181 ctaaagttaa tctcttggtc tggccaagtt gctgctccct caaccttcct gctgtcttcc
3241 cctccctcaa ccccaatagg aggatcccag gataaacact gctgggcagg cgggcaggca
3301 ggcctggggc tgccctgctc actctcattg tctggcctca ggacttagcc atactagact
3361 agtcagcttg cctggaagag ggaggtccca ctatgccttt gggagacacc tatacttagg
3421 aaaaagcctt tgttgtcctc ccatccatcc attaagctgc tatctcagcc tgtcccttct
3481 gccccagggg cttgcctggc ttggctgcag tgcactttga aatgaagtat ctgtcctttg
3541 gcccagcccc tggtttgctt gtagaaaaca tggtaggctt ccccaaggca tctgcaggga
3601 actttggcag cttggggcac cctgaattag caaaaatggg gggtgatgag gtgctgaaga
3661 aggatactta acagcttagt gaggaggcaa gagctcctct gggaccacca cttcttcagg
3721 agagggcctg tgggcttgct tttggaaggc ctcaggcaga cacgtgccct ctgggtgatg
3781 tctgtctgct gccaggatgg agcagaggag cgccacacat ggaggaaagc ccctgtaacg
3841 ttacctacct taaactccac tcatcaaatc tgagaaaagt atccactggt ccccagggtt
3901 tcagtcatgc ttttgggggt cattgggtat tagagaagta agtatctttt ctgagagagg
3961 gggagtcacc ccccctactg gggattcctc tgggctttat tcactcccag ccctggccct
4021 gacctttgtg ggcctcccta atgcccaggg catggatggc ttcagaggag tttttgaatc
4081 gaagcccagg gtccttgttg atgtttcttc tccgagccac acttggagga aagttgcagg
4141 tgggttgggc agggagcagg catggttctg ctttgctgtt tgtcttccta gttaaggctc
4201 tttataaaga gcttcttctt catgttttaa gcactttatg aagaataaaa cattcatgta
4261 ctacaaaaaa aaaaaaaaa
//