LOCUS BC035005 3970 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens FtsJ methyltransferase domain containing 1, mRNA (cDNA
clone MGC:33269 IMAGE:5267637), complete cds.
ACCESSION BC035005
VERSION BC035005.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3970)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3970)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC035005.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: l Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222354.
FEATURES Location/Qualifiers
source 1..3970
/db_xref="H-InvDB:HIT000051295"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33269 IMAGE:5267637"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3970
/gene="FTSJD1"
/gene_synonym="AFT"
/db_xref="GeneID:55783"
/db_xref="HGNC:HGNC:25635"
CDS 338..2650
/gene="FTSJD1"
/gene_synonym="AFT"
/codon_start=1
/product="FtsJ methyltransferase domain containing 1"
/protein_id="AAH35005.1"
/db_xref="GeneID:55783"
/db_xref="HGNC:HGNC:25635"
/translation="MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEW
QLPDPSEIFTCDHTELNAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHV
RKSVNAELCTQAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKS
HRYPCHWSWVANTLNPYHEANDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTG
LQNFISSMATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKM
FTMFEHCSINLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMT
LNFGTEMKRKALFPHHVIPDSFLKRHEECCVFFHKYQLETISENIRLFECMGKAEQEK
LNNLRDCAIQYFMQKFQLKHLSRNNWLVKKSSIGCSTNTKWFGQRNKYFKTYNERKML
EALSWKDKVAKGYFNSWAEEHGVYHPGQSSILEGTASNLECHLWHILEGKKLPKVKCS
PFCNGEILKTLNEAIEKSLGGAFNLDSKFRPKQQYSCSCHVFSEELIFSELCSLTECL
QDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVRLLESAELTTFSCSLLHDGDPTYQR
LFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIFVLHSCFRFITFVCPTSSDPLRT
CAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQVLQFVPMEVLLKGALLDFLW
DLNAAIAKRHLHFIIQREREEIINSLQLQN"
BASE COUNT 1123 a 735 c 818 g 1294 t
ORIGIN
1 gggcggagcc aaagaatgct ccgcctgcgc gcgccgcttc cgttgccata gtggccgggg
61 gcgggaggct ggcgcctccc agcttctgta ctccgcgaag caaaacctag ggagctgagg
121 cctaggcgag gcgagagtcg ccggcgtgcg taacgttggc gcacgtgact ccggcccggc
181 ctacagggcg cgtgcgcagt gggacttgag tgcctcctgg tccctgtctg ccggcattcg
241 cggctgcggg gcccggagtt gctggtagga ggagttggcg gaagcacttg gaactccttt
301 ataagtgtca gctgtgagat tttaatttga tttgaaaatg agtaagtgca gaaagacacc
361 agttcagcag ctagcaagtc ccgcgtcatt cagcccagat attcttgctg acatttttga
421 actctttgcc aagaactttt cttatggcaa gccacttaat aatgagtggc agttaccaga
481 tcccagtgag attttcacct gtgaccacac tgaacttaat gcatttcttg atttgaagaa
541 ctccctaaat gaagtaaaaa acctactgag tgataagaaa ctggatgagt ggcatgagca
601 cactgctttc actaataaag cggggaaaat catttctcat gttagaaaat ctgtgaatgc
661 tgaactttgt actcaagcat ggtgtaagtt ccatgagatt ttgtgcagct ttccacttat
721 tccacaggaa gcttttcaga atggaaaact gaattctcta cacctttgtg aagctccagg
781 agcttttata gctagtctca accactactt aaaatcccat cggtatcctt gtcattggag
841 ttgggtagcg aatactctga atccatacca tgaagcaaat gacgacctca tgatgattat
901 ggatgaccgg cttattgcaa ataccttgca ctggtggtac tttggtccag ataacactgg
961 tgatatcatg accctgaaat tcttgactgg acttcagaat ttcataagca gcatggctac
1021 tgttcacttg gtcactgcag atgggagttt tgattgccaa ggaaacccag gtgaacaaga
1081 agctttagtt tcttctttgc attactgtga agttgtcact gctctgacca ctcttggaaa
1141 cggtggctct tttgttctaa agatgtttac tatgtttgaa cattgttcca taaacttgat
1201 gtacctgcta aactgttgtt ttgaccaagt ccatgttttc aaacctgcta ctagcaaggc
1261 aggaaactcc gaagtctatg tggtttgcct ccactataag gggagagagg ccatccatcc
1321 tctgttatct aagatgacct tgaattttgg gactgaaatg aaaaggaaag ccctttttcc
1381 ccatcatgtg attcctgatt cttttcttaa gagacatgaa gaatgttgtg tgttctttca
1441 taaatatcag ctagagacta tttctgaaaa cattcgtcta tttgagtgca tgggaaaggc
1501 ggaacaagaa aagctgaata atttaaggga ttgtgctata caatatttta tgcaaaaatt
1561 tcaactgaaa catctttcca gaaataattg gctagtaaaa aaatctagta ttggttgtag
1621 tacaaataca aaatggtttg ggcagaggaa caaatatttt aaaacttata atgaaaggaa
1681 gatgctagaa gccctttcat ggaaagataa agtagccaaa ggatacttta atagttgggc
1741 tgaagaacat ggtgtatatc atcctgggca gagttctatt ttagaaggaa cagcttccaa
1801 tcttgagtgt cacttatggc atattttgga gggaaagaaa ctgccaaagg taaaatgttc
1861 tcctttttgc aatggtgaaa ttttaaaaac tcttaatgaa gcaattgaaa agtcattagg
1921 aggagctttt aatttggatt ccaagtttag gccaaaacag cagtattctt gttcttgtca
1981 tgttttttct gaagaactga tattttccga gttgtgtagc cttactgagt gccttcagga
2041 tgagcaggtt gtagtaccca gcaatcaaat aaagtgcctg ctggtgggct tttcgactct
2101 ccgtaatatc aaaatgcata taccgttgga agttcgactc ctagaatcag ctgaactcac
2161 aacttttagc tgttcattgc ttcatgatgg agatccaact taccagcgtt tatttttgga
2221 ctgccttcta cattcattgc gggagcttca tacaggagat gttatgattt tgcctgtact
2281 ttcttgcttc acaagattta tggctggttt gatctttgta ctccacagtt gttttagatt
2341 catcactttt gtttgtccca catcctctga tcccctgagg acctgcgcag tcctgctatg
2401 tgttggttat caggaccttc caaatccagt tttccgatat ttgcagagtg tgaatgaatt
2461 gttgagcact ttgctcaact ctgactcacc ccagcaggtt ttacagtttg tgccaatgga
2521 ggtactcctt aagggggccc tgcttgattt tttgtgggat ttgaatgctg ccattgctaa
2581 aaggcatttg catttcatta ttcaaagaga gagagaagaa attatcaaca gccttcagtt
2641 acaaaactga acatatgctt tctgagattc aactttatga tttcttataa tttgcccagt
2701 atttgcatcc tgttgctcta ttaatttaaa aaccttttat tttggggaaa ggccaacatt
2761 tgcatcattc aaagtctcat taattctgga aaaccatcca ttctgatctc tagggtatat
2821 acacccacag gcatagagct cttccacgtg gtggaatcta tgcaatgata gatattcaca
2881 ctctaaatat gaggtgtgtg tatgtgtatg ggtggccaca gccatgctta cctatgccat
2941 ttagttggtc ttacttaatc tgcttaagat ttgcatctgt gtacctttgt tcagattagt
3001 tttttttttc cagccgattt cctcttagtg gctaatgctg ttagtgaatt ttccaactaa
3061 tttcctctca ttggttaatg ttgttaatga attgagagag gtaattgagg aaaggaaatg
3121 agtaaatcac tgttcagcaa cactgatttc cgttaacaca tcagttatga atttcaggga
3181 attcatctcg ccagattctt gataacatgc cattcattgc ccttaggtga ttgaccctat
3241 tttcttacat ggctcaaata aaactagtat gctgttgtat gaatctttta ctgaccacac
3301 catccaacta taaaaatata acgggacagc tttaaaccaa agatcatgtt tagaacaatg
3361 aaaaattatt tgttgtatct aatacacgcc tgtattgtga aaagcttcat ttagcaatga
3421 tgtaataatt tttaacttcc aggaaataat ctgtgaatgg aaagattttt taagattttg
3481 agatagtgtt tagtctcatg ttgggaacac atgaatgtga tgaacatagt gaatactaaa
3541 gaaaacgctt cagactttca gaatgatggt tcagaattta aaatttttaa tcttttctaa
3601 tttctttttt tcagtgtgaa aatagcactt taccaaaaga ttagccatga aatggttatt
3661 ttgccagtta catttgattt cttttgtatc tgcaatgtaa tgagttattt tatttcttct
3721 gtatttgcag tgtaatgagt ttttgtggca aagtgtatta agcaattttt cattatcttg
3781 aagttccaca aagtggagaa tatttatatt ctcacatgca ttttaggcac ttttgatatg
3841 tgaaaataga tgtattttct gatgcatttg gttaataaat attaatctga acattttcat
3901 gttctttgct attttgaatt ccattataga ttcatgaata aagtcattac tagagaaaaa
3961 aaaaaaaaaa
//