LOCUS BC034992 2628 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens sorting nexin 10, mRNA (cDNA clone MGC:33053
IMAGE:4827599), complete cds.
ACCESSION BC034992
VERSION BC034992.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2628)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2628)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 46 Row: p Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111022.
FEATURES Location/Qualifiers
source 1..2628
/db_xref="H-InvDB:HIT000051288"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33053 IMAGE:4827599"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2628
/gene="SNX10"
/gene_synonym="MGC33054"
/db_xref="GeneID:29887"
/db_xref="HGNC:HGNC:14974"
CDS 189..794
/gene="SNX10"
/gene_synonym="MGC33054"
/codon_start=1
/product="sorting nexin 10"
/protein_id="AAH34992.1"
/db_xref="GeneID:29887"
/db_xref="HGNC:HGNC:14974"
/translation="MFPEQQKEEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFT
MKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFL
RKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEED
EEGKKENDIDYDSESSSSGLGHSSDDSSSHGCKVNTAPQES"
BASE COUNT 905 a 431 c 473 g 819 t
ORIGIN
1 agcggggggg gcgcggggag cgcggggagc gcggggctgc gctcgtgtgc gctcctgggc
61 gctcgccgcc gccgctgccg ccgcgcgcct ttgagtcagc aaactccgcg gcccgcaagc
121 ccggctcggc ccggccctgc tctgttctgc ccggaggagc cgcccattga tcgtgtcctg
181 tgctgaagat gtttccggaa caacagaaag aggaatttgt aagtgtctgg gttcgagatc
241 ctaggattca gaaggaggac ttctggcatt cttacattga ctatgagata tgtattcata
301 ctaatagcat gtgttttaca atgaaaacat cctgtgtacg aagaagatat agagaattcg
361 tgtggctgag gcagagactc caaagtaatg cgttgctggt acaactgcca gaacttccat
421 ctaaaaacct gtttttcaac atgaacaatc gccagcacgt ggatcagcgt cgccagggtc
481 tggaagattt cctcagaaaa gtcctacaga atgcactttt gctttcagat agcagccttc
541 acctcttctt acagagccat ctgaattcag aagacattga ggcgtgtgtt tctgggcaga
601 ctaagtactc tgtggaagaa gcaattcaca agtttgcctt aatgaataga cgtttccctg
661 aagaagatga agaaggaaaa aaagaaaatg atatagatta tgattcagaa agttcatcct
721 ctgggcttgg acacagtagt gatgacagca gttcacatgg atgtaaagta aatacagctc
781 cgcaggaatc ctgaaaaata attctaatgt tactatctta gggatagcaa attatgtcca
841 gtcatagaga agaaagcttc ataataatac attcttacct aaagctcact gtcatgatgt
901 taggtattta aattcttaaa gatgttgggt tgtttattag tggtattttt atgttgtctt
961 attttaggta agcttctgtg taaagctaaa aatcctgtga atacaatact atcctttaca
1021 ggcagacatt attggtaaac aagatcttgc cctccaatga aatgacttac atgttttaaa
1081 aaaccgagtt ggttttattg aatttaaaaa gataggtaac taagtagcat ttaaaatcaa
1141 gatagagcat tccttcttgt atcagtgggg cagtgttacc ataaacacgg tgtatatgtt
1201 gttaaaccct atgaagagta acagtgtaga ccagactgcc tctctcagat atgtgcctga
1261 tattttgtgg atacctcccc tgcactggca aaacactatg cttttgggtg ttagactgaa
1321 atattttaag agtatttaac ctttccagta ttctgtttca cgcttagatg gaaatgtatc
1381 ttatgaatag agacatatta aaataatgtt tacatcttag aaaaaacata gatagtgcta
1441 gtaatattac ttataactgt aatatataga ttcagaaata cattttcatt atccaaaatc
1501 agcttcaaca aatggtttct ggagacaaat aatttgtttt cattatcatt gtataatcag
1561 gttaatgatt tattttttga ctaaatgtgc aatttcttat cactagataa ctttcagtat
1621 cagtggtggt tacttattac ttaaatcaga ggaaggattt tataaagatt aataaattta
1681 attttaccaa taaatattcc cataatttag aaaaggatgt cgacttgcta atttcagaaa
1741 taattattca tttttaaaaa gcccctttta aagcatctac ttgaagattg gtataatttt
1801 cataaaatgt cttttttttt agtgtcccaa agatatctta gataaactat tttgaagttc
1861 agatttcaga tgaggcaaca ttttcttgag ataattaccc aagtttcatc catgttgaat
1921 ggtacaaaat atttctgtga aactaacagg aagatatttt cagataacta ggataacttg
1981 ttgctttgtt acccagccta attgaagagt ggcagaggct actacaaaaa gcaacctttt
2041 cattttcact aagagtttaa aagctattgt attattaaaa agtctttaca atgcttgttt
2101 caaagaacca acagaaaaaa aagctaagaa aactgagaac taacattaaa aaaattaaat
2161 ttagaataag aatgatttct ttaatttgtc ctttttttct ttggtctaaa acattattaa
2221 atttttgtaa atattttgat ttaatgtgtc ttagatcctc attattttaa tacaggaaaa
2281 gaaaagattt agtaatttct taccatgcta atatgtaaag ttcatgccat ccaggcattt
2341 aagagcgatc ctcatccctt cagcaatatg tatttgagtt cacactattt ctgttttaca
2401 gcagttttga aaaacacata ctatgccacc aattgtcata ttatttttag atgatgtaac
2461 atagccatca aaattaatat tatgtaatgc ctaatactta gtatgtaaat gtcacgagat
2521 catttttaca ttaaacgtga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2581 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//