LOCUS BC034964 4259 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens WD repeat domain 47, mRNA (cDNA clone MGC:26714
IMAGE:4823902), complete cds.
ACCESSION BC034964
VERSION BC034964.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4259)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4259)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC034964.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 33 Row: g Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34222316.
FEATURES Location/Qualifiers
source 1..4259
/db_xref="H-InvDB:HIT000051268"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26714 IMAGE:4823902"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4259
/gene="WDR47"
/gene_synonym="KIAA0893"
/db_xref="GeneID:22911"
/db_xref="HGNC:HGNC:29141"
CDS 262..3024
/gene="WDR47"
/gene_synonym="KIAA0893"
/codon_start=1
/product="WD repeat domain 47"
/protein_id="AAH34964.1"
/db_xref="GeneID:22911"
/db_xref="HGNC:HGNC:29141"
/translation="MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGL
FSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMS
AEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTA
RVHCFEEACVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGE
EITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPT
KAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSHDKRISDL
GNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVDAQRPIGSEI
LGQSSVSEKEPANGAQNPGPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQI
YQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDGLGNEVSALNQQCNGS
KGNGSNGSSVTSFTTPPQDSSQRLTHDASNIHTSTPRNPGSTNHIPFLEESPCGSQIS
SEHSVIKPPLGDSPGSLSRSKGEEDDKSKKQFVCINILEDTQAVRAVAFHPAGGLYAV
GSNSKTLRVCAYPDVIDPSAHETPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSN
DKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYT
TDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVGFWDLRVPSCARVVGTTFH
GTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAH
YLLTGSYDMKIKVTDLQGDLTKQLPIMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVT
LWTYNG"
BASE COUNT 1240 a 846 c 939 g 1234 t
ORIGIN
1 actggacaac cgcagtctgc aagaggctga gctgaggagt cgctgggccg ggaggggcgg
61 acgtgagaag gacggattga cgaactgatg gattgacgcg cgggcggtag gagggaggac
121 cgacgccaaa cccagaccgc cgccgtcgtg ctcctgccgc agcccggagc cggcagcttc
181 ggggccctgg ccgccggcct cccagccgcg ttctcctccg ccgctcctcc gggcttgccc
241 tggagccctc aggctatcaa tatgacggct gaagaaacag tgaatgtaaa agaggttgaa
301 atcattaagc taattttgga cttcctgaat tcaaagaagc ttcacattag tatgctggcc
361 ctggagaagg aaagtggagt cataaatggc ctgttttcag atgatatgct tttcctgagg
421 cagctaatac ttgatggtca atgggatgaa gttcttcagt tcattcagcc tctagaatgt
481 atggaaaaat ttgacaaaaa aaggtttcgt tatattatcc tgaagcagaa gtttttagaa
541 gctttatgtg ttaacaacgc gatgtcagca gaagatgagc cccagcatct ggaatttacc
601 atgcaagaag ctgtgcaatg tttacatgct ctagaagaat actgtccttc taaagatgac
661 tatagtaagc tctgtttgct tttgactttg cctcgtctga ccaatcatgc cgagtttaag
721 gactggaatc ccagcaccgc acgagttcac tgttttgaag aggcttgtgt catggttgca
781 gaattcatcc ctgctgatag gaagctaagt gaagctggtt ttaaggctag taacaatcgt
841 ttatttcagc ttgtaatgaa aggcctgctt tatgaatgct gtgtagaatt ttgtcagagt
901 aaagcaactg gagaagaaat tacagaaagc gaagtgcttc ttggcatcga cctcttatgt
961 ggtaatggtt gtgatgattt ggatctgagt ttactgtcat ggcttcagaa tcttccatct
1021 tctgtcttct cttgtgcttt tgaacagaaa atgcttaata ttcatgttga caaacttctg
1081 aaacctacaa aagctgcata tgctgatctt ttgactcctc ttatcagcaa actctctccc
1141 tatccatcat ccccaatgag aaggcctcaa tcagctgatg cctatatgac ccgctctctg
1201 aatcctgctt tagatggcct cacctgtgga ctaaccagtc atgataagag aatttcagac
1261 cttggaaaca aaacttctcc aatgtcacac tcctttgcta acttccatta tccaggggta
1321 caaaacctca gtagaagtct catgcttgag aatacagaat gtcacagtat ttacgaagaa
1381 tcccctgagc gaagtgatac acctgttgat gcacagaggc ctatcggcag tgaaatcttg
1441 ggccagagtt cagtttcaga aaaagagcct gcaaatggag cacagaatcc aggaccagct
1501 aaacaagaaa aaaatgagct tcgagattca acagaacaat ttcaagaata ttataggcaa
1561 agattacgct atcaacagca tttagaacag aaggagcaac agcggcagat ataccaacag
1621 atgttgcttg aaggaggcgt gaatcaggag gatggtcctg atcagcagca gaatcttact
1681 gaacagttcc ttaataggtc cattcaaaag cttggtgaat taaatattgg aatggatggc
1741 cttggtaatg aggtatcagc actcaaccag caatgtaatg ggagcaaagg caatggatct
1801 aatggttctt ctgtgactag ttttactaca ccaccccaag actctagtca gagattaaca
1861 catgatgctt caaatattca tacaagcact cctcgtaatc ctggatcaac aaatcacata
1921 ccttttctgg aggaatcacc ttgtggaagc caaatctctt cagaacattc ggtcattaag
1981 ccacctcttg gagattctcc agggagtctt tcaaggtcga aaggggaaga ggatgacaaa
2041 tcaaaaaagc agtttgtttg tattaatatc ctagaagaca cacaagctgt tagagcagtg
2101 gcttttcatc cagctggagg tttatatgct gttggttcaa attcaaaaac tctgagagta
2161 tgtgcctatc cagatgtaat tgatccaagt gcacatgaga ctcctaagca gccggtggta
2221 cgttttaaaa ggaataaaca tcataaagga tccatttact gtgtggcctg gagtccttgt
2281 gggcagttat tagcaacagg atcaaatgac aaatacgtca aagtgctgcc cttcaatgca
2341 gagacttgta acgcaacagg accagatctg gaatttagta tgcatgatgg aacaattaga
2401 gacttggcat ttatggaagg cccagaaagc ggaggagcta ttttaataag tgctggagca
2461 ggggattgta acatttatac aaccgattgt caaagaggac agggcctcca tgctttgagt
2521 ggacatactg ggcatatttt agcactttat acctggagtg gctggatgat tgcatctggt
2581 tcccaagata agactgttgg attttgggat cttcgagtac caagttgtgc tcgtgttgtt
2641 ggcacaacat ttcatggaac tggcagtgca gtggcatctg tagctgtaga tcccagtggt
2701 cgtctcttag ccacaggtca agaagattct agctgcatgt tgtatgacat aagaggagga
2761 agaatggtac aaagttatca tcctcattcc agtgatgttc gctctgttcg attctcccct
2821 ggagctcact acttgctaac aggctcttat gatatgaaaa taaaggtgac agacctacaa
2881 ggggacctca ccaagcagct tcctatcatg gtggtggggg agcacaagga caaagtgatt
2941 cagtgcagat ggcacaccca ggatctttcc ttcctgtcat cctctgcaga tagaactgtc
3001 accctctgga cttacaatgg gtagagcaca ccgcatgtca gtctatgcag caaaagcaca
3061 gagacttaag actactgagt tgtgaaaatt acaaatctga agaacatagt gtccaggaaa
3121 gtggtttagc acgaagaggc cccttattac catgtatccc actgatagga ggtgttgggt
3181 ggtgttattc cgcagtgctt tcagtcttcc atgtgagctc gtgctgctgt gacctgctat
3241 atgtagtctc gttgccaaag tctgcagaag agctcttcag ttgttggtgt gcactccaag
3301 tcaggatgga caatgtgttt acggtttagt attcaatgca ttccttggtc tttgcctaaa
3361 taacagtttt atatgcacat tgaaatggaa ttatacttca actatattat taaatgtaat
3421 gcaaccaagt tcctcccaga ttaaacttcc caggtgttca gaattacttt tgctcttctc
3481 acgatcccat attgtattat cacttgtctt ctagaggtca gaattccata atatatgtca
3541 ctcaaaagtt acatggttgc tttcacttaa ggatcattat ggagtttaaa gatgaatgaa
3601 aaactgcttc ttagtttact acatggtata ggcccttttt tcttaaaccc agggatatga
3661 ttattttgtc atataatttt gtttcaggct aaaaggtaaa tgtgtttgct tcagaaactt
3721 gttaacttca gttttttgaa tgcaacagga tacctccctt ccaaactgaa ctgtagaagc
3781 agagcagcag cagttatgtg acgcaacact tgatggtaca gtaaatttac tggcattttt
3841 ctccttaaaa attaaaatcc ttgacataga ccatagcatg gcttgaaatg ctatgtctgc
3901 atgataattt aaaatggaag atttaaactt tgcactccaa aagcttattt ggattttttt
3961 cttgcactgt tttgtgtaat gcagaataat gattttattt ctacagcttt gtagattcta
4021 acatttatgt atctttattt tcatattgta cagtaatttt actttaaatt atttaaatag
4081 gctattttat ttatttcaaa tgcagttgta ttagttctca ttattgaact gtctgtgcac
4141 tgtatgtagc aagcattttt catctgttgt atacaagtgg aaagggtatt agaagtgtaa
4201 ctgtgctatt atttcaataa agacctcttg acatttaaaa aagaaaaaaa aaaaaaaaa
//