LOCUS BC034781 2746 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens neuronal pentraxin II, mRNA (cDNA clone MGC:35142
IMAGE:5169124), complete cds.
ACCESSION BC034781
VERSION BC034781.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2746)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2746)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: b Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28195383.
FEATURES Location/Qualifiers
source 1..2746
/db_xref="H-InvDB:HIT000051238"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:35142 IMAGE:5169124"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2746
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
CDS 166..1461
/gene="NPTX2"
/gene_synonym="NARP"
/gene_synonym="NP-II"
/gene_synonym="NP2"
/codon_start=1
/product="neuronal pentraxin II"
/protein_id="AAH34781.1"
/db_xref="GeneID:4885"
/db_xref="HGNC:HGNC:7953"
/db_xref="MIM:600750"
/translation="MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLP
AMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKA
RGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFRE
VLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSA
FKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQA
NEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGT
GENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIA
NCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL"
BASE COUNT 592 a 790 c 805 g 559 t
ORIGIN
1 agcgcggtgg gtgcggctgt gagacggcag gagacttctg ccccgcggtg cacgcgaccc
61 tcgagacgac agcgcggcta ctgccagcag cgaaggcgcc tcccgcggag cgcccagacg
121 gcgcccgctc gcccatgccg agctgagcgc ggcagcggcg gcgggatgct ggcgctgctg
181 gccgccagcg tggcgctcgc cgtggccgct ggggcccagg acagcccggc gcccggtagc
241 cgcttcgtgt gcacggcact gcccccagag gcggtgcacg ccggctgccc gctgcccgcg
301 atgcccatgc agggcggcgc gcagagtccc gaggaggagc tgagggccgc ggtgctgcag
361 ctgcgcgaga ccgtcgtgca gcagaaggag acgctgggcg cgcagcgcga ggccatccgc
421 gagctcacgg gcaagctagc gcgctgcgag gggctggcgg gcggcaaggc gcgcggcgcg
481 ggggccacgg gcaaggacac tatgggcgac ctgccgcggg accccggcca cgtcgtggag
541 cagctcagcc gctcgctgca gaccctcaag gaccgcctgg agagcctcga gcaccagctc
601 agagcaaacg tgtccaatgc tgggctgccc ggcgacttcc gcgaggtgct ccagcagcgg
661 ctgggggagc tggagaggca gcttctgcgc aaggtggcag agctggagga cgagaagtcc
721 ctgctgcaca atgagacctc ggctcaccgg cagaagaccg agagcaccct gaacgcgctg
781 ctgcagaggg tcaccgagct ggagcgaggc aatagcgcct ttaagtcacc agatgcgttc
841 aaggtgtccc tcccactccg cacaaactac ctatacggca agatcaagaa gacgctgcct
901 gagctgtacg ccttcaccat ctgcctgtgg ctgcggtcca gcgcctcacc aggcattggc
961 acccccttct cctatgcggt gccagggcag gccaacgaga tcgtgctgat cgagtggggc
1021 aacaacccca tcgagctgct catcaacgac aaggttgcgc agctgcccct gtttgtcagt
1081 gacggcaagt ggcaccacat ctgtgtcacc tggacgacac gggatggcat gtgggaggca
1141 ttccaggacg gagagaagct gggcactggg gagaacctgg ccccctggca ccccatcaag
1201 cccgggggcg tgctgatcct tggacaagag caggacaccg tggggggtag gtttgatgcc
1261 actcaggcat ttgtcgggga gctcagccag ttcaacatat gggaccgcgt ccttcgcgca
1321 caagaaattg tcaacatcgc caactgctcc acaaacatgc cgggcaacat catcccgtgg
1381 gtggacaata acgtcgatgt gttcggaggg gcctccaagt ggcccgtgga gacgtgtgag
1441 gagcgtctcc ttgacttgta gccgccttct cctctgtcca ggaggccggg atcaggctgt
1501 tgccatggaa gttcagggcc atagactgcc ccacttaaac tcttgtcagt ctgggctcag
1561 ggttcccaga gctcattccc caggaatctc taagaccagg gctggggcag tgtctgtcac
1621 tggcttgttt gttccctacc aatattctgt tgctgtttga agtagtgcca gggtcccctg
1681 ggaagatgcc cccaagacac ctgccccaag tgggtggata tctgccttcc tgctgcaagt
1741 ggaggcaggt ccagcagccc ctcttcagag cccctgtaaa tgctatcgca gcctgagtcc
1801 tgccgccttc cagttccttg gtgtcccgtg caccccttct gtctgtcccc tttcatggct
1861 gtgcagccgt cccgctggag tggccatgtc ccttgtgcat tgagtgcatc cccgctggtg
1921 actaagctcg cagcaagcgg ctaccccccg atctgcaaaa gggcctctcc ctttgtgttc
1981 tatacattgt gaatcttccc gtctgaagaa cgcccagcct gcccagacaa agccccgcct
2041 tccccaaagc agaggggctg tctgtgtctc cagaaagggg acatcggggg ggaggggggc
2101 tcagaaagga gaagggctgt gatctccggt cccttccccc atcatccttc cttagactga
2161 tgctttgact gaatcatcac tagctatggc attaaaaggc ctctcttctc atctggtgcc
2221 aaaggttccg ttgcagcttt ttacaaccat ccggtgtggt ttggaggttt tgtttttttt
2281 ttttcccaac agaaaagaac agccattaga agaaggctcc cattttctga tgttccgccc
2341 cactgtgaag agtgtgctcg ttttaaattc atgttgattc ttgtaagcac tggactgtct
2401 tcatcaagta tttccctaca gaactcctca agaaaacaga gatcatttgg ctagagattg
2461 tctgagtgac tccaagctac tcactgtatt ggacgggagt agtaatttat tttaaagata
2521 aagtgactaa gtggggaaat ttataaagct aaatattata tattttattt ttcatacatg
2581 tttgaagtgc aaatctgtgg atattccatt tgtaggacca agtcgacatg cccatcctga
2641 cattgtatgc tacgagaact cttctgatga tggaatttcg attaaagtgc actgaaagat
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//