LOCUS BC034688 3246 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ring finger protein (C3H2C3 type) 6, mRNA (cDNA clone
MGC:21246 IMAGE:4508997), complete cds.
ACCESSION BC034688
VERSION BC034688.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3246)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3246)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC034688.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 28 Row: g Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 34305292.
FEATURES Location/Qualifiers
source 1..3246
/db_xref="H-InvDB:HIT000051200"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:21246 IMAGE:4508997"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3246
/gene="RNF6"
/db_xref="GeneID:6049"
/db_xref="HGNC:HGNC:10069"
/db_xref="MIM:604242"
CDS 112..2169
/gene="RNF6"
/codon_start=1
/product="ring finger protein (C3H2C3 type) 6"
/protein_id="AAH34688.1"
/db_xref="GeneID:6049"
/db_xref="HGNC:HGNC:10069"
/db_xref="MIM:604242"
/translation="MNQSRSRSDGGSEETLPQDHNHHENERRWQQERLHREEAYYQFI
NELNDEDYRLMRDHNLLGTPGEITSEELQQRLDGVKEQLASQPDLRDGTNYRDSEVPR
ESSHEDSLLEWLNTFRRTGNATRSGQNGNQTWRAVSRTNPNNGEFRFSLEIHVNHENR
GFEIHGEDYTDIPLSDSNRDHTANRQQRSTSPVARRTRSQTSVNFNGSSSNIPRTRLA
SRGQNPAEGSFSTLGRLRNGIGGAAGIPRANASRTNFSSHTNQSGGSELRQREGQRFG
AAHVWENGARSNVTVRNTNQRLEPIRLRSTSNSRSRSPIQRQSGTVYHNSQRESRPVQ
QTTRRSVRRRGRTRVFLEQDRERERRGTAYTPFSNSRLVSRITVEEGEESSRSSTAVR
RHPTITLDLQVRRIRPGENRDRDSIANRTRSRVGLAENTVTIESNSGGFRRTISRLER
SGIRTYVSTITVPLRRISENELVEPSSVALRSILRQIMTGFGELSSLMEADSESELQR
NGQHLPDMHSELSNLGTDNNRSQHREGSSQDRQAQGDSTEMHGENETTQPHTRNSDSR
GGRQLRNPNNLVETGTLPILRLAHFFLLNESDDDDRIRGLTKEQIDNLSTRHYEHNSI
DSELGKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVLGSNIA
NNG"
BASE COUNT 1133 a 549 c 681 g 883 t
ORIGIN
1 ttgggaagag atggtcagct ctcaaaaaag gcacaaacaa ttgaaggatg gataccatgg
61 catatgttaa aagcgtgttg aaaggaaaat aagaaagcca ggaatctcag gatgaatcag
121 tctagatcga gatcagatgg tggcagtgaa gaaaccttac ctcaagacca taatcatcat
181 gaaaatgaga gaagatggca gcaagagcgt ctccacagag aagaggccta ttatcagttt
241 attaatgaac tcaatgatga agattatcgg cttatgagag accataatct tttaggcacc
301 cctggagaaa taacatcaga agaactgcaa cagcggttag atggcgtcaa ggaacaacta
361 gcatctcagc ctgacttgag agatggaacg aattacagag actcagaagt ccctagagaa
421 agttcacatg aagattctct tctagaatgg ttgaacacct ttcggcgcac aggaaatgca
481 actcgaagtg gacaaaatgg gaaccaaact tggagagctg tgagtcgaac aaacccgaac
541 aatggagagt ttcggtttag tttggaaatc cacgtaaatc atgaaaatag aggatttgaa
601 attcatggag aagattatac agacattcca ctttcagata gtaacagaga tcatactgca
661 aataggcaac aaaggtcaac tagtcctgtg gctaggcgaa caagaagcca aacctcagtg
721 aatttcaatg gtagtagttc caacattcca aggactaggc ttgcttcaag ggggcaaaat
781 ccagctgaag gatctttctc aacattggga aggttaagaa atggaattgg gggagcagct
841 ggcattcctc gagctaacgc ttcacgcact aatttcagta gtcacacaaa ccaatcaggt
901 ggtagtgaac tcaggcaaag ggaggggcaa cggtttggag cagcacatgt ttgggaaaat
961 ggggctagaa gtaatgttac agtgaggaat acaaaccaaa gattagagcc aataagatta
1021 cgatctactt ccaatagtcg aagccgttca ccaattcaga gacagagtgg cactgtttat
1081 cataattccc aaagggaaag tagaccagta cagcaaacca ctagaagatc tgttaggagg
1141 agaggtagaa ctcgagtctt tttagagcaa gatagagaac gagaacgcag aggtactgca
1201 tataccccat tctctaattc aaggcttgtg tcaagaataa cagtagaaga aggagaagaa
1261 tccagcagat cctcaactgc tgtacgacga catccaacaa tcacactgga ccttcaagtg
1321 agaaggatcc gtcctggaga aaatagagat cgggatagta ttgcaaatag aactcgatcc
1381 agagtagggc tagcagaaaa tacagtcact attgaaagca atagtggggg ctttcgccga
1441 accatttctc gtttagagcg gtcaggtatt cgaacctatg ttagtaccat aacagttcct
1501 cttcgtagga tttctgagaa tgagcttgtt gagccatcat cagtggctct tcggtcaatt
1561 ttaaggcaga tcatgactgg gtttggagaa ctgagttctc taatggaggc cgattctgag
1621 tcagaacttc aaagaaatgg ccagcattta ccagacatgc actcagaact gagtaactta
1681 ggtacagata acaacaggag ccagcacagg gaaggttcct ctcaagacag gcaggcccaa
1741 ggagacagca ctgaaatgca tggtgaaaac gagaccaccc agcctcatac tcgaaacagt
1801 gacagtaggg gtggcaggca gttgcgaaat ccaaacaatt tagttgaaac tggaacacta
1861 cccattcttc gccttgctca ctttttttta ctaaatgaaa gtgatgatga tgatcgaata
1921 cgtggtttaa ccaaagagca gattgacaat ctttccacca ggcactatga gcataacagt
1981 attgatagtg aactaggtaa aatctgtagt gtttgtatta gtgactatgt aactggaaac
2041 aagctcaggc aattaccttg catgcatgaa tttcacattc attgtattga ccgatggctc
2101 tcagagaatt gcacttgtcc gatctgtcgg cagcctgttt tagggtctaa catagcaaac
2161 aatgggtaag gtgatgggat ctactcaaat actgtttttt agtagaactg aatgttcaag
2221 cattgttttg ctgagttatt tgtgattagc taaccaggat gaaaaataac agattatata
2281 tagtttgaac tatttttcgt gtgctttttt aaacttgtta aaaagaaatt tatataaaat
2341 ttaaaataca aatgttaaat tatccagaaa tacagaatag ttaatattgc tagaaccaaa
2401 taacctctaa aatgttttta ttttggtaat tttgtcatgc taagcacttt tgtatctgca
2461 caattcagta ggttaagaat caatcttctt tttcttaata gtacagcaga ctttagcttc
2521 aagtttcata ggcttagtac ttatatctag acatttgtgt ctaaataagc ttttcattaa
2581 ctttttattt taaggacagt atcttttcat gaaagagtat ttggctgaat gtttgctata
2641 tatatgttac ttgaaatgtt aaatttaata tgcagcatac cataggtgta tatataggta
2701 tataatttta aggttaaaat attcagtcta caagtttggt tcttatttaa gcttttgggc
2761 taatactgca tatggcacaa tgtttaatat tggcaagttc atctcagaga aaggggattc
2821 agatataatt ttaaagtaga gataatttac tgaagcgtct ctgacaatct aacttattag
2881 acagcaagca atatataata ctgaaaaagt attcagaaat ggaaaattta catcatatag
2941 gttatttaac ttgtgttcag cctttttgta acttttttga aagtgcaaac aattctttgg
3001 attattaaat aaggtatcca gtatgcatgg tttctcaaat ttagctttaa aatctaaaag
3061 tctataaaga atcagatgca taggcaatat gttaagttca cttggaggct aaaaatctcc
3121 agtgaaaaca aaacgaaaac ctttaagaga atgtagagtt tatataaaca caaagtatgc
3181 attgaagatc tgtttctacc aataaacatt aaaccaaaaa aaaaaaaaaa aaaaaaaaaa
3241 aaaaaa
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