LOCUS BC034530 3803 bp mRNA linear HUM 07-AUG-2008
DEFINITION Homo sapiens FYVE, RhoGEF and PH domain containing 1, mRNA (cDNA
clone MGC:24891 IMAGE:4938457), complete cds.
ACCESSION BC034530
VERSION BC034530.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3803)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3803)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 29 Row: o Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24797152.
FEATURES Location/Qualifiers
source 1..3803
/db_xref="H-InvDB:HIT000051179"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:24891 IMAGE:4938457"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3803
/gene="FGD1"
/gene_synonym="AAS"
/gene_synonym="ZFYVE3"
/db_xref="GeneID:2245"
/db_xref="HGNC:HGNC:3663"
/db_xref="MIM:300546"
CDS 247..3132
/gene="FGD1"
/gene_synonym="AAS"
/gene_synonym="ZFYVE3"
/codon_start=1
/product="FYVE, RhoGEF and PH domain containing 1"
/protein_id="AAH34530.1"
/db_xref="GeneID:2245"
/db_xref="HGNC:HGNC:3663"
/db_xref="MIM:300546"
/translation="MHGHRAPGGAGPSEPEHPATNPPGAAPPACADSDPGASEPGLLA
RRGSGSALGGPLDPQFVGPSDTSLGAAPGHRVLPCGPSPQHHRALRFSYHLEGSQPRP
GLHQGNRILVKSLSLDPGQSLEPHPEGPQRLRSDPGPPTETPSQRPSPLKRAPGPKPQ
VPPKPSYLQMPRMPPPLEPIPPPPSRPLPADPRVAKGLAPRAEASPSSAAVSSLIEKF
EREPVIVASDRPVPGPSPGPPEPVMLPQPTSQPPVPQLPEGEASRCLFLLAPGPRDGE
KVPNRDSGIDSISSPSNSEETCFVSDDGPPSHSLCPGPPALASVPVALADPHRPGSQE
VDSDLEEEDDEEEEEEKDREIPVPLMERQESVELTVQQKVFHIANELLQTEKAYVSRL
HLLDQVFCARLLEEARNRSSFPADVVHGIFSNICSIYCFHQQFLLPELEKRMEEWDRY
PRIGDILQKLAPFLKMYGEYVKNFDRAVELVNTWTERSTQFKVIIHEVQKEEACGNLT
LQHHMLEPVQRIPRYELLLKDYLLKLPHGSPDSKDAQKSLELIATAAEHSNAAIRKME
RMHKLLKVYELLGGEEDIVSPTKELIKEGHILKLSAKNGTTQDRYLILFNDRLLYCVP
RLRLLGQKFSVRARIDVDGMELKESSNLNLPRTFLVSGKQRSLELQARTEEEKKDWVQ
AINSTLLKHEQTLETFKLLNSTNREDEDTPPNSPNVDLGKRAPTPIREKEVTMCMRCQ
EPFNSITKRRHHCKACGHVVCGKCSEFRARLVYDNNRSNRVCTDCYVALHGVPGSSPA
CSQHTPQRRRSILEKQASVAAENSVICSFLHYMEKGGKGWHKAWFVVPENEPLVLYIY
GAPQDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKITQSHLSWYFSPETEELQRRWMA
VLGRAGRGDTFCPGPTLSEDREMEEAPVAALGATAEPPESPQTRDKT"
BASE COUNT 805 a 1231 c 1059 g 708 t
ORIGIN
1 cggcgatgcc tggcacggca gcggcggtgg ccgcggctgc tgctgctgct actgccaccg
61 ctgccacggc tgctggcccg ggcccgggct gggggcttga gtctctgcag tggggctgag
121 cccgcagtcc cgccccccga tcctgaggcc gctgctccgc cgggcgccgg gcctcctccg
181 cccgcgcctc cgccccagga gctggagcca agcggggagc tcgggccccg cgcccaggcc
241 cggaccatgc atggccaccg agccccgggg ggcgccgggc cttcggagcc cgaacacccg
301 gccacgaacc cgccgggcgc cgctccgccg gcctgtgccg actcggaccc tggagcctcg
361 gaacccggac tgctggcgcg caggggctca ggttcggctc ttggcggccc actggatccc
421 cagtttgtcg gaccctcgga caccagcctg ggcgctgctc caggccaccg ggtcttgccc
481 tgcggtccca gtccacagca ccaccgggcc ctgcgcttct cttaccacct ggagggctcg
541 cagcctcggc ctgggctgca ccagggaaac cggatcctgg ttaaaagttt gtcccttgac
601 cctggccaaa gcctagagcc tcatccagaa ggtccccagc ggcttcgctc agacccaggt
661 cccccgactg aaacccctag ccagcgtcct tcaccactga agcgggcacc gggcccgaag
721 ccacaggtgc ccccaaagcc cagctacctg cagatgcccc ggatgccccc cccactggag
781 cccatccccc ctccaccatc acgcccactg cctgccgacc cccgagtggc caagggcctg
841 gctcccaggg cagaggccag ccccagttct gcagcagtat cctcactgat tgagaagttt
901 gaaagagagc ctgtgattgt cgcctcggat agaccagtcc ctggccccag cccaggtccc
961 ccagagccag tcatgttgcc acagccaacc tcgcagccac cagtgcccca gctccccgag
1021 ggtgaggcct cccgctgcct gtttctgctg gctcctgggc cccgggacgg tgagaaggtg
1081 cccaaccggg acagcggcat tgatagcatc agctcgccat ccaacagcga ggagacctgc
1141 ttcgtcagtg atgacgggcc ccccagccac agcctctgcc ctgggccccc tgccctggct
1201 agtgtgcctg ttgccttggc cgacccccac cggcctggct cccaagaggt tgacagtgac
1261 ctggaggagg aggacgacga ggaggaggag gaagagaagg acagagaaat cccagtgccc
1321 ctgatggaga gacaggagtc tgtggagttg actgtgcagc aaaaggtgtt tcacattgcc
1381 aatgagctcc tgcaaactga gaaggcctac gtttccaggc tccatctcct ggatcaggtg
1441 ttctgtgccc ggctgctgga agaagctcgg aaccgcagtt ccttcccggc cgacgttgtc
1501 cacggcatct tctctaacat ctgctccatc tattgcttcc accagcagtt cctgctgcct
1561 gagctagaga agcgcatgga ggaatgggac cgctatccac gcattggaga catcctgcag
1621 aaactggccc ccttcctcaa gatgtatggt gagtatgtga agaactttga ccgggccgtg
1681 gagctggtca acacctggac agagcgctcc acccagttta aagtcatcat ccatgaggtg
1741 cagaaggagg aagcctgtgg caacctgaca ttgcagcacc acatgctgga gcctgtgcag
1801 cgcatccccc gctatgagct tcttctcaag gactatctgt taaagctgcc ccatggctcc
1861 ccggacagca aggatgccca aaagtctctg gagctgatcg ccacagcagc agagcactcg
1921 aatgctgcca tccgcaaaat ggagcgaatg cataagctgc tgaaggtata tgagctgtta
1981 gggggcgagg aggacattgt cagccccacc aaagagctca taaaagaagg ccacatcctt
2041 aagctgtcag caaagaatgg gaccactcaa gaccgatacc tcatactatt caacgaccgc
2101 ctcctttact gcgtgcccag gctgcggctc cttggccaga agtttagcgt gcgggcacgc
2161 attgatgtag atggcatgga gctaaaggag agctccaacc tcaatctgcc tcgaaccttc
2221 ctggtgtcag gaaagcagcg ctccctcgag ctccaggcca ggactgagga ggagaagaaa
2281 gactgggtcc aggccatcaa ctccaccctc ctgaagcatg aacagacgct ggagactttc
2341 aaactgttga actcaacaaa cagggaagat gaagacaccc cacccaactc tccaaacgtg
2401 gatcttggga agcgggcacc tacgcccatc cgggaaaagg aagtcaccat gtgcatgcgc
2461 tgccaggagc ccttcaattc tatcaccaaa cgcaggcacc actgcaaggc ctgcgggcat
2521 gtggtttgtg ggaagtgctc cgagttccgg gcccgcctcg tctatgacaa caaccgctcc
2581 aaccgtgtgt gcactgattg ctatgtggcc ttgcacgggg tgcctgggag cagtccagcc
2641 tgcagccagc atacacccca gcgccggagg tccatcctgg agaaacaggc ctcagtggct
2701 gcagagaaca gcgtcatctg cagcttcctg cactacatgg agaagggtgg caaaggatgg
2761 cacaaggcat ggttcgtggt ccctgaaaat gaacccttgg tgctgtatat ctacggagcc
2821 cctcaggatg tgaaagccca gcgcagcctg cccctcattg gcttcgaggt gggaccgccc
2881 gaggcagggg agcggcctga cagaaggcat gtcttcaaga tcacccagag ccacctcagc
2941 tggtacttca gccctgagac agaggaacta cagcgacgct ggatggctgt gcttggccgg
3001 gcgggccgag gggacacgtt ctgcccgggg cccacactgt ctgaggacag ggagatggag
3061 gaggcaccgg tggctgcttt aggagccact gctgaacccc ccgaatcccc ccagacccga
3121 gacaagacct agagggtttg ggacaaactg ggagccccca ccccacactc tagttgccca
3181 tgtctgattg ggggctctag ccccttccct cccagctcag tcaatacttg aactcccatc
3241 acgggcactt tcaatcccga atgctgggtc ttgggttttt taattcatct tttcacaaaa
3301 cgtgggcttt taaaaaatat attcctacag tgatgtcaat ttttattaat ccctgtcccc
3361 agggagggtg ggagccgttg ccagtcctac ctgaattagg tcgtttttct ccctcatccc
3421 tcaataccct accacagatc ctgcctccac ccagttcccc acaaagcacc agaggtagga
3481 gacctggatt caagtgccag ctctgccact gaccctgggg ccccgaccca gccctgcctc
3541 ctcagccagt gtcttcacac gtacaactcc acgtggggtg gcaactagac ctctcctgcc
3601 tctcccatgg cttacagctt ctacccggcc ccaaggctac ccagtatttt atcgtccaga
3661 cccatggcag ggccagcggg caggacaggg aaacaggggg gaggacaatg gatactcagt
3721 tttttgtgtt tttttgtgtg tttttttttt tttaagaaaa atacagttta tttcaggctt
3781 acagtaaaaa aaaaaaaaaa aaa
//