LOCUS BC034494 3718 bp mRNA linear HUM 19-MAR-2009 DEFINITION Homo sapiens synovial sarcoma translocation gene on chromosome 18-like 1, mRNA (cDNA clone MGC:26711 IMAGE:4823298), complete cds. ACCESSION BC034494 VERSION BC034494.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3718) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3718) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC034494.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 33 Row: f Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 39777611 The stop codon of the CDS annotated on this record is located > 55 bases upstream of a splice junction, and therefore the mRNA is predicted to be subject to nonsense-mediated mRNA decay (NMD). FEATURES Location/Qualifiers source 1..3718 /db_xref="H-InvDB:HIT000051167" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26711 IMAGE:4823298" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3718 /gene="SS18L1" /gene_synonym="CREST" /gene_synonym="LP2261" /db_xref="GeneID:26039" /db_xref="HGNC:HGNC:15592" /db_xref="MIM:606472" CDS 56..1246 /gene="SS18L1" /gene_synonym="CREST" /gene_synonym="LP2261" /codon_start=1 /product="SS18L1 protein" /protein_id="AAH34494.1" /db_xref="GeneID:26039" /db_xref="HGNC:HGNC:15592" /db_xref="MIM:606472" /translation="MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKT AECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQ GSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGPASQ GVPMQGQGTIGNYVSRTNINMQSNPVSMIQQQAATSHYSSAQGGSQHYQGQSSIAMMG QGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYPDGH GDYAYQQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQYPS QQSYPGQQQGYGSAQGAPSQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQGQYG NYQQ" BASE COUNT 1034 a 872 c 860 g 952 t ORIGIN 1 agggcagccg gagtatccac ctcgatgacc acgggctgag ccccgcgccg ccaccatgtc 61 cgtggccttc gcgtctgccc ggccaagagg caaaggggag gttacgcagc aaaccatcca 121 gaagatgctg gacgagaacc accacctgat ccagtgcatc ctggagtacc agagcaaggg 181 caagacggcc gagtgcacgc agtaccagca gatcctgcac cggaacctgg tatacctggc 241 cacgatcgca gactccaacc agaacatgca gtccctgctt cctgccccgc ccacgcagaa 301 catgaacctg ggccctggag ccctgactca gagcggctcc agccagggcc tgcactctca 361 gggcagcctg agtgacgcca tcagcacggg cctgccaccc tcctccctcc tgcagggcca 421 gattggcaac gggccgagcc acgtgtccat gcagcagacg gcgcctaaca cgctgcccac 481 cacctccatg agcatctctg ggcccggcta cagccacgcg ggacccgcct cgcagggcgt 541 ccccatgcag gggcaaggca ccatcggcaa ctacgtgtct cggaccaaca tcaacatgca 601 gtccaaccca gtctccatga tacagcagca ggcggccacg tcgcactaca gctcggcgca 661 gggcggcagc cagcactacc agggccagtc gtccatcgcc atgatggggc agggcagcca 721 ggggagcagc atgatggggc agcggcccat ggcgccctac cggccctccc agcaaggctc 781 ttcccagcag tacctgggcc aggaggagta ctatggcgag cagtacagcc acagccaggg 841 cgccgcggag cccatgggcc agcagtacta ccccgacggc catggcgatt acgcctacca 901 gcagtcatcc tacacggagc agagctacga ccggtccttc gaggagtcca cgcagcacta 961 ctatgagggg ggaaactccc agtacagcca gcagcaggcc gggtaccagc agggtgccgc 1021 gcagcagcag acgtactccc agcagcagta ccccagccag cagagctacc ccgggcagca 1081 gcagggctac gggtctgccc agggagcccc gtcacagtac cccggctacc agcaaggcca 1141 aggccagcag tacggaagct accgagcacc gcagacagcg ccgtctgccc agcagcagcg 1201 gccctacggc tatgaacagg gccagtatgg aaattaccag cagtaaggga cacacattct 1261 ggctggagcc cttgtggtag cgtgttcatc caggggccgg atgggctggc ggcagctctg 1321 gtgaattgtg acatgttggt tacctgttcg cccagtgcca cgtctgcatg tgaagcgtgc 1381 tcatttcatg ctgggaccta cttgctcaga tctccaagca agcatttctt ttcttttagg 1441 gatgtctgaa agtcacatcc agttacatta ctgtgttctt tctaatgaaa agtaaaggtt 1501 ttatatagag aaacttgagt aatttttaca tttctaagac attaaatccc atttaaattc 1561 tgtgtgaaca ttaaagacag cacacttgca aaagtatggt caaaggaaaa aaatcccaca 1621 tttcaattaa caagtagcat ggacatttga tcaaccttta gttggaataa taatattcat 1681 atttgctatg aatcctttta aaaaaatctt tggataaatg ctgacagatt tccaagaact 1741 accaagaaaa tacaagagat atccaatgct tgatatatga ggcctagtaa taacgatatt 1801 tctctttaat tgatgttttg ttttaaaagt taaaagtaat tcttggcgtg gtggttcacg 1861 cctgtaatcc cagcactttg ggaggccgaa gcgggcggat cacctgaggt cgggagttcg 1921 agaccagcct gaccaacatg gagaaacccc gtccctacta aaaatacaaa attagccagg 1981 tatggtggtg catacctgta atcccagcta ctcgggaacc tgaggcagga gaatggcttg 2041 aacccaggag acagaggttg tggtggggca agatcgcacc attgcacccg agcctaggca 2101 acaagagtga aattccgtct caaaaaaata aataaataaa taagttaaaa ttaattcttt 2161 atccagagtc gggtgcttta gaatttataa gtcacttatg tgttttgctt gaattaattc 2221 tgacagcccc tatgaggaaa tctggaggca ggtaacagtt cccattttag agatgaagaa 2281 ctgaggcaca gattaaagga cttgcctgtg ttgaatacca gtcctgttct aggacattct 2341 cccctctcct aggagacgga tgtcacgcac aaatggggag agaagtgttt attttgtagg 2401 cactaagggt ttctaaaacc cttaacactg gtaagggctc aaaaataaac gtatgtgttc 2461 atattcgatc accgaaatga gagttcttaa ttgctaattg acaaacgcgt tagcaatttc 2521 agttagggag tcatctccct tgattgtgtt cttttcctgt caattttcat agacctaatt 2581 tgcaaactca atcggggact aaaatttccc actgaaaatg ttaaacattt tagataactg 2641 tgaagatagt ttatttttat tccttgccaa tctgggaata tgcctttttt gtgtgtttgt 2701 gtgttttttt aagtgctgta ttaataatac tttctgaaag aaaaggacac ttaccccaaa 2761 acttcaatct gaaatgtctt acattaagaa tatcttgaat gttgtgtata tattttaaaa 2821 agcactttgc aaaatagttt gtacatttat ttcctaattt atacatgatt tttggtgtta 2881 atatatttaa tgattaataa cagaatgttt atttaatgtg ctgtccattt ttatgtaata 2941 ttatggggaa agtgatgcca gcagttcctt ttcattattc tatcttctgt catatgaatg 3001 ttgagcaaaa cttaggccaa catgaattgt ttgtgaagtg tggttgatgg tgctttgttt 3061 ttttctgact acttctatgg aaggccagtg aagaagcaaa ggaagacatg aaaattgacg 3121 ctcattcttc ttcctattgt tccctgacat ccagcaaatt gtgaatttga aaaatgatgg 3181 ccagttttca gaagtgctga caaattcata ttggtatgca aaagctcatc acccattaag 3241 gtttgttgtt gaatcaacag tactcagcat attaaaacag tacatcagaa ctcatgccaa 3301 cagtctttat gatgggatta aggtggacaa gatctcctaa gatctgtgaa tgggattaag 3361 gtggacaaga tctcctaaga tctgaaaaga aaccttaata cgctcatatg gttggagtgt 3421 taagtgaacc tctgattttg tcagggtttt tctacgtgta ggcgtgaata gggggcaccc 3481 cttcaaaact gtacaaagaa gacgactgtt ttccatttcc atttaaacat ttttagccac 3541 ttcatttcta tttattgaac aggtcaaatt tgtcttgtta tttgtgagta cagtacattt 3601 aaaaaacatc cttatcggtt attttttttt cagtcggagt ttgacgtata aattgtttat 3661 gcttttggtg taatctctta ataaactggt tcttcaaaaa tcaaaaaaaa aaaaaaaa //