LOCUS BC034476 1156 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens frequently rearranged in advanced T-cell lymphomas, mRNA (cDNA clone MGC:26295 IMAGE:4823463), complete cds. ACCESSION BC034476 VERSION BC034476.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1156) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1156) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (11-JUL-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Institute for Systems Biology http://www.systemsbiology.org contact: amadan@systemsbiology.org Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 33 Row: g Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31317233. FEATURES Location/Qualifiers source 1..1156 /db_xref="H-InvDB:HIT000051158" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:26295 IMAGE:4823463" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1156 /gene="FRAT1" /db_xref="GeneID:10023" /db_xref="HGNC:HGNC:3944" /db_xref="MIM:602503" CDS 169..1008 /gene="FRAT1" /codon_start=1 /product="frequently rearranged in advanced T-cell lymphomas" /protein_id="AAH34476.1" /db_xref="GeneID:10023" /db_xref="HGNC:HGNC:3944" /db_xref="MIM:602503" /translation="MPCRREEEEEAGEEAEGEEEEEDSFLLLQQSVALGSSGEVDRLV AQIGETLQLDAAQHSPASPCGPPGAPLRAPGPLAAAVPADKARSPAVPLLLPPALAET VGPAPPGVLRCALGDRGRVRGRAAPYCVAELATGPSALSPLPPQADLDGPPGAGKQGI PQPLSGPCRRGWLRGAAAPRRLQQRRGSQPETRTGDDDPHRLLQQLVLSGNLIKEAVR RLHSRRLQLRAKLPQRPLLGPLSAPVHEPPSPRSPRAACSDPGASGRAQLRTGDGVLV PGS" BASE COUNT 175 a 416 c 419 g 146 t ORIGIN 1 agcgggcgcg gctagagtgc ctggcgggct ccggcttccg cgtccgcccc ggccccggtc 61 cagacttagt cttcagctcc gcgcccgctc cgccgcggcc caccgcgccc gccggcagcc 121 gagcccccag cgacgcccgc acagctccgg gtgcccagac agggggccat gccgtgccgg 181 agggaggagg aagaggaagc cggcgaggag gcggaggggg aggaagagga ggaggacagc 241 ttcctcctac tgcagcagtc agtggcgctg ggcagctcgg gcgaggtgga ccggctggtg 301 gcccagatcg gcgagacgct gcagctggac gcggcgcagc acagcccggc ctcgccgtgc 361 gggcccccgg gggcgccgct gcgggccccg gggcccctgg ctgcggcggt gccggcggac 421 aaggccaggt ccccggcggt gccgctgctg ctgccgcccg cgttggcgga gactgtgggc 481 ccggcgccgc ctggggtcct gcgctgcgcc ctgggggacc gcggccgcgt gcggggccgc 541 gctgcgccct actgcgtggc cgagctcgcc acaggcccca gcgcgctgtc cccactgccc 601 cctcaggccg accttgatgg gcctccggga gctggcaagc agggcatccc gcagccgctg 661 tcgggtccgt gccggcgagg atggctccgg ggcgccgccg ccccccgccg cctgcagcag 721 cgacgcgggt cccaaccaga aacccgcaca ggcgacgacg acccgcaccg gcttctgcag 781 cagctagtgc tctctggaaa cctcatcaag gaggccgtgc gaaggcttca ttcgcgacgg 841 ctgcagttac gtgcaaagct tccccaacgc ccgctcctgg gacctctgtc ggccccggtg 901 catgaacccc cttcgcctcg cagccctcgc gcggcctgca gtgaccctgg cgcctccggg 961 agggcgcagc tcagaactgg cgacggcgtt cttgtgcctg gcagctaaca cgcccggggt 1021 ggccacagcg ccagcctcag actggagggc aaggggttcc cttgagggct gcagttctac 1081 tcaggctggt ggagaactct ggcttttgga agcgagagta aaaagctaat gacgaggaac 1141 caaaaaaaaa aaaaaa //