LOCUS BC034418 3745 bp mRNA linear HUM 06-JUN-2006
DEFINITION Homo sapiens neuroblastoma breakpoint family, member 1, mRNA (cDNA
clone IMAGE:3896523), complete cds.
ACCESSION BC034418
VERSION BC034418.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3745)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3745)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 52 Row: a Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657016
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..3745
/db_xref="H-InvDB:HIT000042131_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3896523"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_70"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3745
/gene="NBPF1"
/gene_synonym="AB13"
/gene_synonym="AB14"
/gene_synonym="AB23"
/gene_synonym="AD2"
/gene_synonym="FLJ20719"
/gene_synonym="KIAA1693"
/gene_synonym="NBG"
/gene_synonym="NBPF"
/db_xref="GeneID:55672"
/db_xref="HGNC:HGNC:26088"
CDS 402..2213
/gene="NBPF1"
/gene_synonym="AB13"
/gene_synonym="AB14"
/gene_synonym="AB23"
/gene_synonym="AD2"
/gene_synonym="FLJ20719"
/gene_synonym="KIAA1693"
/gene_synonym="NBG"
/gene_synonym="NBPF"
/codon_start=1
/product="NBPF1 protein"
/protein_id="AAH34418.1"
/db_xref="GeneID:55672"
/db_xref="HGNC:HGNC:26088"
/translation="MLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKL
REGRDASCSLNQHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDD
EDVQVEVAEKVQKSSAPREMPKAEEKEVPEDSLEECAITCSNSHGPYDSNQPHRKTKI
TFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQ
ESWDEGYSTLSIPPEMLASYKSYSGTFHSLEEQQVCMAVDIGGHRWDQVKKEDQEATG
PRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYILEQQRVGWALDM
DEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYR
SAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEAVEPEVLQDSLDRCY
STPSSCLEQPDSCLPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSTKKRRRR
GRKEGEEDQNPPCPRLSGVLMEVEEPEVLQDSLDRCYSTPSMFFELPDSFQHYRSVFY
SFEEQHISFALDVDNRFLTLMGRSLHLVFQMGVIFPQ"
BASE COUNT 1094 a 828 c 895 g 928 t
ORIGIN
1 gtgccatcac ttgttcaaat agccacagcc cttgtgactc caaccagcct cacaagaaca
61 tcaacatcac ctttgaggaa gacaaagtca actcaactct ggttgtagac agagaatcct
121 ctcatgatga atgtcaggat gctgtaaaca ttctcccagt ccctggcccc acctcttctg
181 ccacaaacgt cagcatggtg gtatcagccg gccctttgtc cagcgagaag gcagagatga
241 acattctaga aatcaacgag aaattgcatc cccagctggc agagaagaaa cagcagttca
301 gaaacctcaa agagaaatgt tttgtaactc aactggcctg cttcctggcc aaccagcaga
361 acaaatacaa aaatgaagag tgcaaagacc tcataaaatc tatgctgagg aatgagcgac
421 agttcaagga ggagaagctt gcagagcagc tcaagcaagc tgaggagctc aggcaatata
481 aagtcctggt tcactctcag gaacgagagc tgacccagtt aagggagaag ttacgggaag
541 ggagagatgc ctcctgctca ttgaatcagc atctccaggc cctcctcact ccggatgagc
601 cagacaagtc ccaggggcag gacctccaag aacagctggc tgaggggtgt agactggcac
661 agcaccttgt ccaaaagctc agcccagaaa atgacaacga tgacgatgaa gatgttcaag
721 ttgaggtggc tgagaaagtg cagaaatcgt ctgcccccag ggagatgccg aaggctgaag
781 aaaaggaagt ccctgaggac tcactggagg aatgtgccat cacttgttca aatagccatg
841 gcccttatga ctccaaccag ccacatagga aaaccaaaat cacatttgag gaagacaaag
901 tcgactcaac tctcattggc tcatcctctc atgttgaatg ggaggatgct gtacacatta
961 tcccagaaaa tgaaagtgat gatgaggaag aggaagaaaa agggccagtg tctcccagga
1021 atctgcagga gtctgaagag gaggaagtcc cccaggagtc ctgggatgaa ggttattcga
1081 ctctctcaat tcctcctgaa atgttggcct cgtacaagtc ttacagcggc acatttcact
1141 cattagagga acagcaagtc tgcatggctg ttgacatagg cggacatcgg tgggatcaag
1201 tgaaaaagga ggaccaagag gcaacaggtc ccaggctcag cagggagctg ctggatgaga
1261 aagggcctga agtcttgcag gactcactgg atagatgtta ttcaactcct tcaggttatc
1321 ttgaactgac tgactcatgc cagccctaca gaagtgcctt ttacatattg gagcaacagc
1381 gtgttggctg ggctcttgac atggatgaaa ttgaaaagta ccaagaagtg gaagaagacc
1441 aagacccatc atgccccagg ctcagcaggg agctgctgga tgagaaagag cctgaagtct
1501 tgcaggactc actggataga tgttattcga ctccttcagg ttatcttgaa ctgcctgact
1561 taggccagcc ctacagaagt gctgtttact cattggagga acagtacctt ggcttggctc
1621 ttgacgtgga cagaattaaa aaggaccaag aagaggaaga agaccaaggc ccaccatgcc
1681 ccaggctcag cagggagctg ctggaggcag tagagcctga agtcttgcag gactcactgg
1741 atagatgtta ttcaactcct tccagttgtc ttgaacagcc tgactcctgc ctgccctatg
1801 gaagttcctt ttatgcattg gaggaaaaac atgttggctt ttctcttgac gtgggagaaa
1861 ttgaaaagaa ggggaagggg aagaaaagaa ggggaagaag atcaacgaag aaaagaagga
1921 gaaggggaag aaaagaaggg gaagaagatc aaaacccacc atgccccagg ctcagcggtg
1981 tgctgatgga agtggaagag cctgaagtct tacaggactc actggataga tgttattcga
2041 ctccgtcaat gttctttgaa ctacctgact cattccagca ctacagaagt gtgttttact
2101 catttgagga acagcacatc agcttcgccc ttgacgtgga caataggttt cttactttga
2161 tgggaagaag tctccacctg gtcttccaga tgggagtcat attcccacaa taagcagccc
2221 ttactaagcc gagagatgtc attcctgcag gcaggaccta taggcacgtg aagatttgaa
2281 tgaaactata gttccatttg gaagcccaga cataggatgg gtcagtgggc atggctctat
2341 tcctattctc agaccatgcc agtggcaacc tgtgctcagt ctgaagacaa tggacccaag
2401 ttaggtgtga cacgttcaca taactgtgca gcacatgccg ggagtgatca gtcagacatt
2461 ttaatttgaa ccacgtatct ctgggtagct acaaagttcc tcagggattt cattttgcag
2521 gcatgtctct gagcttctat acctgctcaa ggtcagtgtc atctttgtgt ttagctcatc
2581 caaaggtgtt accctggttt caatgaacct aacctcattc tttgtatctt cagtgttgaa
2641 ttgttttagc tgatccatct ttaacgcagg agggatcctt ggctgaggat tgtatttcag
2701 aaccaccaac tgctcttgac aattgttaac ccgctaggct cctttggtta gagaagccac
2761 agtccttcag cctccaattg gtgtcagtac ttaggaagac cacagctaga tggacaaaca
2821 gcattgggag accttagccc tgctcctctc gattccatcc tgtagagaac aggagtcagg
2881 agccgctggc aggagacagc atgtcaccca ggactctgcc ggtgcagaat atgaacaacg
2941 ccatgttctt gcagaaaacg cttagcctga gtttcatagg aggtaatcac cagacaactg
3001 cagaatgtag agcactgagc aggacaactg acctgtctcc ttcacatagt ccatatcacc
3061 acaaatcaca caacaaaaag gagaagagat attttgggtt caaaaaaagt aaaaagataa
3121 tatagctgca tttctttagt tattttgaac cccaaatatt tcctcatctt tttgttgttg
3181 tcattgatgg tggtgacatg gacttgttta tagaggacag gtcagctgtc tggctcaatg
3241 atctacattc tgaagttgtc tgaaaatgtc ttcatgatta aattcagcct aaacgttttg
3301 ccgggaacac tgcagagaca atgctgtgag tttccaacct tagcccatct gcgggcagag
3361 aaggtctagt ttgtccatca gcattatcat gatatcagga ctggttactt ggttaaggag
3421 gggtctagga gatctgtccc ttttagagac accttactta taatgaagta tttgggaggg
3481 tggttttcaa aagtagaaat gtcctgtatt ccgatgatca tcctgtaaac attttatcat
3541 ttattaatca tccctgcctg tgtctattat tatattcata tctctacgct ggaaactttc
3601 tgcctcaatg tttactgtgc ctttgttttt gctagtttgt gttgttgaaa aaaaaaacat
3661 tctctgcctg agttttaatt tttgtccaaa gttattttaa tctatacaat taaaagcttt
3721 tgcctatcaa aaaaaaaaaa aaaaa
//