LOCUS BC034403 1626 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-X-C motif) receptor 3, mRNA (cDNA clone
MGC:34593 IMAGE:5176136), complete cds.
ACCESSION BC034403
VERSION BC034403.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1626)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1626)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 51 Row: m Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504098.
FEATURES Location/Qualifiers
source 1..1626
/db_xref="H-InvDB:HIT000042123"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34593 IMAGE:5176136"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1626
/gene="CXCR3"
/gene_synonym="CD182"
/gene_synonym="CD183"
/gene_synonym="CKR-L2"
/gene_synonym="CMKAR3"
/gene_synonym="IP10"
/gene_synonym="IP10-R"
/gene_synonym="Mig-R"
/gene_synonym="MigR"
/db_xref="GeneID:2833"
/db_xref="HGNC:HGNC:4540"
/db_xref="MIM:300574"
CDS 39..1145
/gene="CXCR3"
/gene_synonym="CD182"
/gene_synonym="CD183"
/gene_synonym="CKR-L2"
/gene_synonym="CMKAR3"
/gene_synonym="IP10"
/gene_synonym="IP10-R"
/gene_synonym="Mig-R"
/gene_synonym="MigR"
/codon_start=1
/product="chemokine (C-X-C motif) receptor 3"
/protein_id="AAH34403.1"
/db_xref="GeneID:2833"
/db_xref="HGNC:HGNC:4540"
/db_xref="MIM:300574"
/translation="MVLEVSDHQVLNDAEVAALLENFSSSYDYGENESDSCCTSPPCP
QDFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLL
VLTLPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLY
RRGPPARVTLTCLAVWGLCLLFALPDFIFLSAHHDERLNATHCQYNFPQVGRTALRVL
QLVAGFLLPLLVMAYCYAHILAVLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVL
VDILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLL
RLGCPNQRGLQRQPSSSRRDSSWSETSEASYSGL"
BASE COUNT 294 a 563 c 428 g 341 t
ORIGIN
1 gcagcacacc acccagcagc cagagcacca gcccagccat ggtccttgag gtgagtgacc
61 accaagtgct aaatgacgcc gaggttgccg ccctcctgga gaacttcagc tcttcctatg
121 actatggaga aaacgagagt gactcgtgct gtacctcccc gccctgccca caggacttca
181 gcctgaactt cgaccgggcc ttcctgccag ccctctacag cctcctcttt ctgctggggc
241 tgctgggcaa cggcgcggtg gcagccgtgc tgctgagccg gcggacagcc ctgagcagca
301 ccgacacctt cctgctccac ctagctgtag cagacacgct gctggtgctg acactgccgc
361 tctgggcagt ggacgctgcc gtccagtggg tctttggctc tggcctctgc aaagtggcag
421 gtgccctctt caacatcaac ttctacgcag gagccctcct gctggcctgc atcagctttg
481 accgctacct gaacatagtt catgccaccc agctctaccg ccgggggccc ccggcccgcg
541 tgaccctcac ctgcctggct gtctgggggc tctgcctgct tttcgccctc ccagacttca
601 tcttcctgtc ggcccaccac gacgagcgcc tcaacgccac ccactgccaa tacaacttcc
661 cacaggtggg ccgcacggct ctgcgggtgc tgcagctggt ggctggcttt ctgctgcccc
721 tgctggtcat ggcctactgc tatgcccaca tcctggccgt gctgctggtt tccaggggcc
781 agcggcgcct gcgggccatg cggctggtgg tggtggtcgt ggtggccttt gccctctgct
841 ggacccccta tcacctggtg gtgctggtgg acatcctcat ggacctgggc gctttggccc
901 gcaactgtgg ccgagaaagc agggtagacg tggccaagtc ggtcacctca ggcctgggct
961 acatgcactg ctgcctcaac ccgctgctct atgcctttgt aggggtcaag ttccgggagc
1021 ggatgtggat gctgctcttg cgcctgggct gccccaacca gagagggctc cagaggcagc
1081 catcgtcttc ccgccgggat tcatcctggt ctgagacctc agaggcctcc tactcgggct
1141 tgtgaggccg gaatccgggc tcccctttcg cccacagtct gacttccccg cattccaggc
1201 tcctccctcc ctctgccggc tctggctctc cccaatatcc tcgctcccgg gactcactgg
1261 cagccccagc accaccaggt ctcccgggaa gccaccctcc cagctctgag gactgcacca
1321 ttgctgctcc ttagctgcca agccccatcc tgccgcccga ggtggctgcc tggagcccca
1381 ctgcccttct catttggaaa ctaaaacttc atcttcccca agtgcgggga gtacaaggca
1441 tggcgtagag ggtgctgccc catgaagcca cagcccaggc ctccagctca gcagtgactg
1501 tggccatggt ccccaagacc tctatatttg ctcttttatt tttatgtcta aaatcctgct
1561 taaaactttt caataaacaa gatcgtccgg aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1621 aaaaaa
//