LOCUS BC034049 4869 bp mRNA linear HUM 25-AUG-2008
DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 27, mRNA
(cDNA clone MGC:26823 IMAGE:4815297), complete cds.
ACCESSION BC034049
VERSION BC034049.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4869)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4869)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: l Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23821014.
FEATURES Location/Qualifiers
source 1..4869
/db_xref="H-InvDB:HIT000042062"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26823 IMAGE:4815297"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4869
/gene="DNAJC27"
/gene_synonym="RabJS"
/db_xref="GeneID:51277"
/db_xref="HGNC:HGNC:30290"
CDS 52..873
/gene="DNAJC27"
/gene_synonym="RabJS"
/codon_start=1
/product="DnaJ (Hsp40) homolog, subfamily C, member 27"
/protein_id="AAH34049.1"
/db_xref="GeneID:51277"
/db_xref="HGNC:HGNC:30290"
/translation="MEANMPKRKEPGRSLRIKVISMGNAEVGKSCIIKRYCEKRFVSK
YLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKD
SFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLY
FETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAIRRIRNSKDS
WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK"
BASE COUNT 1433 a 1002 c 1000 g 1434 t
ORIGIN
1 agcggtgcac aagaagagac cgaggcgggt ggccccgaga gagccagggc catggaggcc
61 aacatgccga agcggaagga gcctggcagg tctctccgca tcaaagtcat ctccatgggc
121 aacgccgaag tggggaaaag ctgtattata aagcgatact gtgagaaaag attcgtgtct
181 aaatacctgg caacaattgg aattgactat ggagtcacaa aggtacacgt cagagacaga
241 gaaatcaaag ttaacatctt tgatatggct ggacatccct tcttctatga ggttcgaaat
301 gagttttaca aggacacaca gggtgtgata ctggtctatg atgttgggca gaaagactcc
361 tttgacgccc ttgatgcgtg gctggcagaa atgaagcaag agcttggacc tcatggaaac
421 atggaaaata ttatatttgt agtttgtgcc aacaagattg attgtaccaa acatcgctgt
481 gtagatgaaa gtgaaggacg tctttgggct gaaagcaaag ggttcctgta ctttgaaact
541 tcagcacaaa ctggagaagg cattaatgag atgttccaga ccttttatat atccatagtt
601 gatttatgtg aaaatggcgg gaaacgccct accaccaata gcagtgctag tttcaccaaa
661 gaacaagcag atgccattcg cagaattcga aatagtaaag acagttggga catgctggga
721 gtcaaacctg gggcctcaag ggatgaagtc aataaagcgt atcggaaact tgctgtgctt
781 cttcaccctg acaaatgtgt agcacctggc agtgaagatg ccttcaaagc agttgtgaat
841 gctcggacag ccctcctgaa aaacatcaag tagaaagtac agaaaaaagc cacatgtggg
901 actcaaatgc aaacagactt tccctagagg tgaaataacc aacgtggagt tttccttccc
961 agaatctcac tgctcttttc attcatgtgt tgtcatttgt atatcagtaa ttcaggtacc
1021 catttcatag acattttact gagaaatgac ctgcatttgt atgaagtgaa ctgagcgtca
1081 caccctgtac ttcatttcat atttctagat aattctgaat ttttttctca ttcgtcagct
1141 ctgtaattat agtatcactt agacatttca cttggggaaa tccacaaggt tcctggagga
1201 gggaagagag gacaagagga ccctttcact ttttcttttt tacggaattc atcatcagag
1261 aagaaaataa caaaaatgga agcaaacaac atcagaaccc ctgtaagttt ggtgtgacct
1321 tacagacaag ttgctgcttt tacaatgagt tccttaggtg gtattttaac ccatcgatct
1381 ataatgatga ctcttggcag ccctttggga gtttgtaaaa tgaggtgata cagttctgaa
1441 ttgagcattc ctttatgata ttcactctgt tcctcttctg cagccaccag tgggagagac
1501 aagccagtcc taagagaaaa ggtggtggca gccacaaatt ctaggtacac tggctgctgc
1561 ctatcctgtc cctggatctg aggcctttcc cttgccatag aaatggttgc tggtagcagt
1621 agagagcact gtgcacctgg gaatgaggaa tcaggcccca agacagaagt acttggagga
1681 gccagctgca gtagtatccg cctgtagtcc cagctactca ggaggctgag acaggaggat
1741 tgcttaagcc caggagctca agtcccacct gggcaacata gtaagatctt gtctcttaaa
1801 gaaaaaaaaa aaaggtactt agaggtcgca cttaaagatt atgcacatca gcagaggaaa
1861 ggccagccaa gcttggggca agcttgatgc agtaggagag actccttatg aggcttagcc
1921 cttgtcttac tgccagcctt tgccacaggc aggtgagaaa ggcagggcca ctcctcagca
1981 aagttggcct cttctacact tcctcaccag tgttgtttct tccttttttc ccctcttccc
2041 cttcccgtct tgtgtttttt ctgaacccca catctgccat catttctctc ctctagagtc
2101 cctggcttct ggccactgcc tcctccctct tctaagcctt ggcctgaatc tggttgatca
2161 gaggcaagtg tggatccttt gggtggcagt caggggagat ctcagggcct ctgttgggag
2221 gaatctctgt aattcctgct tgggctccaa atttctgaag agtaatattt ttaaactata
2281 gcttacaaaa tacattctct gaccacagtc tcctccttga tatacaaggg atggatgaag
2341 ttcatgtatt aggactggca ctccttacgg tgcttataga actagtctca caacttgact
2401 cattacgtcg tcattcttgt tacatcactc atacttttag ctgcaaccac actaattcac
2461 atttttatat actttcaatt agctgtacta attggggctt gaaagtatat aaaatcttcc
2521 tgtcctgtga attttaaaaa gctatcccat atcgattgcc aaagagcatc taccttacct
2581 cctaagaaga aaagccactt tcttccaatc caagcccact gcagccttgt ggattttcca
2641 cacagcagct tttcactgta tgcctgtact tgggctgcac tgagcttgtc ttcaggaaac
2701 cagagcgttg ctttatcatc gcacttttca tcttggtaat atcaaaacaa ctttttaaat
2761 gaactgattg atatatgtta tttcttgcga ggttttcctc tggcctttaa ctggcttctg
2821 aggctacaga actccaaccc agagttcttc gggacctaaa ttttgcttaa ggaaggcctt
2881 tatcatgctg aaagcactca gacatgtctg tcctcacagc agaatgtaga agtcatatga
2941 atgagggatc gtgcacggta gcgtcagccc gaattgacac gacaactctg aatgtgtggc
3001 cctctatgaa agctggtgcc agttttcatc actgttatta aatactagat tgggaacctc
3061 attcagccgt attgcacaga tgagcaatta cagcagagaa aattcattag tgctcccact
3121 catatcctta tgtgtgagtt ggtgaaattt agcctgagct tgattcttag gtcttgagac
3181 tcagtttcca acaccttcat tattaatgtt aagaatggcc atataccact tcatttacgt
3241 aaaaggaata aaataagcaa gttaagcttc agggtcctag aatttttctg atttctataa
3301 tccttcagca gaatattaag aaataaagca tgatctgcaa tggaaaggtt tttttggcac
3361 taacttcatg cagaatttca cagacatcta tgcattaatt taaattcgtg gtgcaaatgt
3421 gtgctttgta gttcaacctt attaaaaatt cttcagccag ttaggatttc aaaatacatt
3481 agtgagagta acagctagca gaataattac aatggctaaa acgtttttat agagaatctt
3541 gtttttcaaa aaagaataaa aagtttgaat agctattatt aaagaaaagc catgtcttca
3601 acatctgagt caccaagaag taacactttt taaacttgtt agaaatccct ggaggcattt
3661 caaattcatc ttctaaccta cctaagcact ttaaaataca gcctccttct gttcctctgt
3721 tccccttcat gcctcctttt gaattgatat ctcagctgtc aatatttctt tgacttcagc
3781 attgttattt tatttctcta tatcaatgtg tccttagttt tcttagcctg ttaatttaaa
3841 aatccagact tgggggtcat tgtgttgcta cccaagagaa aatgctacag ttttatagat
3901 tgcacatcat tctttaaggc atacttttac ctcaggaaac ttactctagt atgttctcat
3961 atattgaatt ctcaactaag taactatttc tttataccta taaactagta cctaattcac
4021 tgttagttaa atgagctata gataaggcag ctaaatttct gaaagatagc cagagtaagt
4081 aagcagccac tgcaagctct gaatcagttt tttaaaaaaa agaaaaaaaa aaaaaaggag
4141 ctgtgcccca ttgaacaatg acaacatcac aaggggaagg gagggatttt gccaaaagtt
4201 agaaaggtgg agctgtaagc catgtgcttg ttgcctttga cagtgacagt gcgcgtctta
4261 caactaattc cactaggcat gggaatgtca cctcctttgc cactgtaccc catcaagctt
4321 actctgaatc aaaggttttg taaaactttt gaaaatgaac ttagctgcaa aatatagcta
4381 accactttca attgcaagct ttgcaaagtg aagagaggtt cgtacttctc ataattggta
4441 tttagcacaa ttgtaagata cagttttact gtttgtacat cgtttttttc cattaaactt
4501 ttctagagaa gacaaaagct tacactggtg acatggataa gtgagatggt gtctaacgag
4561 cagtgcaata ttaggcggtg caatagaggc cctgttggca agatgagttt tgctggagag
4621 ctggacagtg ttggttagct tcctgcattg attgcccctg ggcgttcttc ccccttaact
4681 gtgaaagcag agtctataaa tgaactcttt gctcttacaa ggtaatttac atattttctt
4741 tctgttgaaa taactgaaaa tgttaaatct accagtttat gtcttgtaaa cagagtgtca
4801 tatgtattta agttgtgtat ttttataaag taaagccaag tatcaaacac cggaaaaaaa
4861 aaaaaaaaa
//