LOCUS BC034040 4735 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase, receptor type, N
polypeptide 2, mRNA (cDNA clone MGC:26506 IMAGE:4811578), complete
cds.
ACCESSION BC034040
VERSION BC034040.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4735)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4735)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 32 Row: i Column: 20.
FEATURES Location/Qualifiers
source 1..4735
/db_xref="H-InvDB:HIT000042055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26506 IMAGE:4811578"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4735
/gene="PTPRN2"
/gene_synonym="IA-2beta"
/gene_synonym="IAR"
/gene_synonym="ICAAR"
/gene_synonym="PTPRP"
/db_xref="GeneID:5799"
/db_xref="HGNC:HGNC:9677"
/db_xref="MIM:601698"
CDS 105..3065
/gene="PTPRN2"
/gene_synonym="IA-2beta"
/gene_synonym="IAR"
/gene_synonym="ICAAR"
/gene_synonym="PTPRP"
/codon_start=1
/product="protein tyrosine phosphatase, receptor type, N
polypeptide 2"
/protein_id="AAH34040.1"
/db_xref="GeneID:5799"
/db_xref="HGNC:HGNC:9677"
/db_xref="MIM:601698"
/translation="MGPPLPLLLLLLLLLPPRVLPAAPSSVPRGRQLPGRLGCLLEEG
LCGASEACVNDGVFGRCQKVPAMDFYRYEVSPVALQRLRVALQKLSGTGFTWQDDYTQ
YVMDQELADLPKTYLRRPEASSPARPSKHSVGSERRYSREGGAALANALRRHLPFLEA
LSQAPASDVLARTHTAQDRPPAEGDDRFSESILTYVAHTSALTYPPGPRTQLREDLLP
RTLGQLQPDELSPKVDSGVDRHHLMAALSAYAAQRPPAPPGEGSLEPQYLLRAPSRMP
RPLLAPAAPQKWPSPLGDSEDPSSTGDGARIHTLLKDLQRQPAEVRGLSGLELDGMAE
LMAGLMQGVDHGVARGSPGRAALGESGEQADGPKATLRGDSFPDDGVQDDDDRLYQEV
HRLSATLGGLLQDHGSRLLPGALPFARPLDMERKKSEHPESSLSSEEETAGVENVKSQ
TYSKDLLGQQPHSEPGAAAFGELQNQMPGPSKEEQSLPAGAQEALSDGLQLEVQPSEE
EARGYIVTDREVLGPAVTFKVSANVQNVTTEDVEKATVDNKDKLEETSGLKILQTGVG
SKSKLKFLPPQAEQEDSTKFIALTLVSLACILGVLLASGLIYCLRHSSQHRLKEKLSG
LGGDPGADATAAYQELCRQRMATRPPDRPEGPHTSRISSVSSQFSDGPIPSPSARSSA
SSWSEEPVQSNMDISTGHMILSYMEDHLKNKNRLEKEWEALCAYQAEPNSSFVAQREE
NVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPATV
ADFWQMVWESGCVVIVMLTPLAENGVRQCYHYWPDEGSNLYHIYEVNLVSEHIWCEDF
LVRSFYLKNLQTNETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYRGRSCPIIV
HCSDGAGRSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEFALTA
VAEEVNAILKALPQ"
BASE COUNT 1066 a 1411 c 1342 g 916 t
ORIGIN
1 ggggggagga gccggcggcg cgcgcctccc tgggcccgga ctcggccgcc tcccgccgcc
61 tcccgcgcgg ccatggactg agcgccgccg gccaggccgc ggggatgggg ccgccgctcc
121 cgctgctgct gctgctactg ctgctgctgc cgccacgcgt cctgcctgcc gccccttcgt
181 ccgtcccccg cggccggcag ctcccggggc gtctgggctg cctgctcgag gagggcctct
241 gcggagcgtc cgaggcctgt gtgaacgatg gagtgtttgg aaggtgccag aaggttccgg
301 caatggactt ttaccgctac gaggtgtcgc ccgtggccct gcagcgcctg cgcgtggcgt
361 tgcagaagct ttccggcaca ggtttcacgt ggcaggatga ctatactcag tatgtgatgg
421 accaggaact tgcagacctc ccgaaaacct acctgaggcg tcctgaagca tccagcccag
481 ccaggccctc aaaacacagc gttggcagcg agaggaggta cagtcgggag ggcggtgctg
541 ccctggccaa cgccctccga cgccacctgc ccttcctgga ggccctgtcc caggccccag
601 cctcagacgt gctcgccagg acccatacgg cgcaggacag accccccgct gagggtgatg
661 accgcttctc cgagagcatc ctgacctatg tggcccacac gtctgcgctg acctaccctc
721 ccgggccccg gacccagctc cgcgaggacc tcctgccgcg gaccctcggc cagctccagc
781 cagatgagct cagccctaag gtggacagtg gtgtggacag acaccatctg atggcggccc
841 tcagtgccta tgctgcccag aggcccccag ctccccccgg ggagggcagc ctggagccac
901 agtaccttct gcgtgcaccc tcaagaatgc ccaggccttt gctggcacca gccgcccccc
961 agaagtggcc ttcacctctg ggagattccg aagacccctc tagcacaggc gatggagcac
1021 ggattcatac cctcctgaag gacctgcaga ggcagccggc tgaggtgagg ggcctgagtg
1081 gcctggagct ggacggcatg gctgagctga tggctggcct gatgcaaggc gtggaccatg
1141 gagtagctcg aggcagccct gggagagcgg ccctgggaga gtctggagaa caggcggatg
1201 gccccaaggc caccctccgt ggagacagct ttccagatga cggagtgcag gacgacgatg
1261 atagacttta ccaagaggtc catcgtctga gtgccacact cgggggcctc ctgcaggacc
1321 acgggtctcg actcttacct ggagccctcc cctttgcaag gcccctcgac atggagagga
1381 agaagtccga gcaccctgag tcttccctgt cttcagaaga ggagactgcc ggagtggaga
1441 acgtcaagag ccagacgtat tccaaagatc tgctggggca gcagccgcat tcggagcccg
1501 gggccgctgc gtttggggag ctccaaaacc agatgcctgg gccctcgaag gaggagcaga
1561 gccttccagc gggtgctcag gaggccctca gcgacggcct gcaattggag gtccagcctt
1621 ccgaggaaga ggcgcggggc tacatcgtga cagacagaga ggttctcgga ccagcagtga
1681 ccttcaaagt gagcgccaat gtccaaaacg tgaccactga ggatgtggag aaggccacag
1741 ttgacaacaa agacaaactg gaggaaacct ctggactgaa aattcttcaa accggagtcg
1801 ggtcgaaaag caaactcaag ttcctgcctc ctcaggcgga gcaagaagac tccaccaagt
1861 tcatcgcgct caccctggtc tccctcgcct gcatcctggg cgtcctcctg gcctctggcc
1921 tcatctactg cctccgccat agctctcagc acaggctgaa ggagaagctc tcgggactag
1981 ggggcgaccc aggtgcagat gccactgccg cctaccagga gctgtgccgc cagcgtatgg
2041 ccacgcggcc accagaccga cctgagggcc cgcacacgtc acgcatcagc agcgtctcat
2101 cccagttcag cgacgggccg atccccagcc cctccgcacg cagcagcgcc tcatcctggt
2161 ccgaggagcc tgtgcagtcc aacatggaca tctcaaccgg ccacatgatc ctgtcctaca
2221 tggaggacca cctgaagaac aagaaccggc tggagaagga gtgggaagcg ctgtgcgcct
2281 accaggcgga gcccaacagc tcgttcgtgg cccagaggga ggagaacgtg cccaagaacc
2341 gctccctggc tgtgctgacc tatgaccact cccgggtcct gctgaaggcg gagaacagcc
2401 acagccactc agactacatc aacgctagcc ctatcatgga tcacgacccg aggaaccccg
2461 cgtacatcgc cacccaggga ccgctgcccg ccaccgtggc tgacttttgg cagatggtgt
2521 gggagagcgg ctgcgtggtg atcgtcatgc tgacacccct cgcggagaac ggcgtccggc
2581 agtgctacca ctactggccg gatgaaggct ccaatctcta ccacatctat gaggtgaacc
2641 tggtctccga gcacatctgg tgtgaggact tcctggtgag gagcttctat ctgaagaacc
2701 tgcagaccaa cgagacgcgc accgtgacgc agttccactt cctgagttgg tatgaccgag
2761 gagtcccttc ctcctcaagg tccctcctgg acttccgcag aaaagtaaac aagtgctaca
2821 ggggccgttc ttgtccaata attgttcatt gcagtgacgg tgcaggccgg agcggcacct
2881 acgtcctgat cgacatggtt ctcaacaaga tggccaaagg tgctaaagag attgatatcg
2941 cagcgaccct ggagcacttg agggaccaga gacccggcat ggtccagacg aaggagcagt
3001 ttgagttcgc gctgacagcc gtggctgagg aggtgaacgc catcctcaag gcccttcccc
3061 agtgagcggc agcctcaggg gcctcagggg agcccccacc ccacggatgt tgtcaggaat
3121 catgatctga ctttaattgt gtgtcttcta ttataactgc atagtaatag ggcccttagc
3181 tctcccgtag tcagcgcagt ttagcagtta aaagtgtatt tttgtttaat caaacaataa
3241 taaagagaga tttgtggaaa aatccagtta cgggtggagg ggaatcggtt catcaatttt
3301 cacttgctta aaaaaaatac tttttcttaa agcacccgtt caccttcttg gttgaagttg
3361 tgttaacaat gcagtagcca gcacgttcga ggcggtttcc aggaagagtg tgcttgtcat
3421 ctgccacttt cgggagggtg gatccactgt gcaggagtgg ccggggaagc tggcagcact
3481 cagtgaggcc gcccggcaca caaggcacgt ttggcatttc tctttgagag agtttatcat
3541 tgggagaagc cgcggggaca gaactgaacg tcctgcagct tcggggcaag tgagacaatc
3601 acagctcctc gctgcgtctc catcaacact gcgccgggta ccatggacgg ccccgtcagc
3661 cacacctgtc agcccaagca gagtgattca ggggctcccc gggggcagac acctgtgcac
3721 cccatgagta gtgcccactt gaggctggca ctcccctgac ctcacctttg caaagttaca
3781 gatgcacccc aacattgaga tgtgttttta atgttaaaat attgatttct acgttatgaa
3841 aacagatgcc cccgtgaatg cttacctgtg agataaccac aaccaggaag aacaaatctg
3901 ggcattgagc aagctatgag ggtccccggg agcacacgaa ccctgccagg cccccgctgg
3961 ctcctccagg cacgtcccgg acctgtgggg ccccagagag gggacatttc cctcctggga
4021 gagaaggaga tcagggcaac tcggagaggg ctgcgagcat ttccctcccg ggagagatca
4081 gggcgacctg cacgcactgc gtagagcctg gaagggaagt gagaaaccag ccgaccggcc
4141 ctgcccctct tcccgggatc acttaatgaa ccacgtgttt tgacatcatg taaacctaag
4201 cacgtagaga tgattcggat ttgacaaaat aacatttgag tatccgattc gccatcaccc
4261 cctaccccag aaataggaca attcacttca ttgaccagga tgatcacatg gaaggcggcg
4321 cagaggcagc tgtgtgggct gcagatttcc tgtgtggggt tcagcgtaga aaacgcacct
4381 ccatcccgcc cttcccacag cattcctcca tcttagatag atggtactct caaaggccct
4441 accagaggga acacggccta ctgagcggac agaatgatgc caaaatattg cttatgtctc
4501 tacatggtat tgtaatgaat atctgcttta atatagctat catttctttt ccaaaattac
4561 ttctctctat ctggaattta attaatcgaa atgaatttat ctgaatatag gaagcatatg
4621 cctacttgta atttctaact ccttatgttt gaagagaaac ctccggtgtg agatatacaa
4681 atatatttaa ttgtgtcata ttaaacttct gatttcacaa aaaaaaaaaa aaaaa
//