LOCUS BC034028 1369 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens SHANK-associated RH domain interactor, mRNA (cDNA
clone MGC:23904 IMAGE:4737834), complete cds.
ACCESSION BC034028
VERSION BC034028.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1369)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1369)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 37 Row: j Column: 13.
FEATURES Location/Qualifiers
source 1..1369
/db_xref="H-InvDB:HIT000042049"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:23904 IMAGE:4737834"
/tissue_type="Prostate, adenocarcinoma."
/clone_lib="NIH_MGC_60"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1369
/gene="SHARPIN"
/gene_synonym="DKFZP434N1923"
/gene_synonym="SIPL1"
/db_xref="GeneID:81858"
/db_xref="HGNC:HGNC:25321"
CDS 14..1177
/gene="SHARPIN"
/gene_synonym="DKFZP434N1923"
/gene_synonym="SIPL1"
/codon_start=1
/product="SHANK-associated RH domain interactor"
/protein_id="AAH34028.1"
/db_xref="GeneID:81858"
/db_xref="HGNC:HGNC:25321"
/translation="MAPPAGGAAAAASDLGSAAVLLAVHAAVRPLGAGPDAEAQLRRL
QLSADPERPGRFRLELLGAGPGAVNLEWPLESVSYTIRGPTQHELQPPPGGPGTLSLH
FLNPQEAQRWAVLVRGATVEGQNGSKSNSPPALGPEACPVSLPSPPEASTLKGPPPEA
DLPRSPGNLTEREELAGSLARAIAGGDEKGAAQVAAVLAQHRVALSVQLQEACFPPGP
IRLQVTLEDAASAASAASSAHVALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCL
CVPERSLASYGVRQDGDPAFLYLLSAPREAPATGPSPQHPQKMDGELGRLFPPSLGLP
PGPQPAASSLPSPLQPSWSCPSCTFINAPDRPGCEMCSTQRPCTWDPLAAAST"
BASE COUNT 268 a 465 c 408 g 228 t
ORIGIN
1 ggccggaccg gagatggcgc cgccagcggg cggggcggcg gcggcggcct cggacttggg
61 ctccgccgca gtgctcttgg ctgtgcacgc cgcggtgagg ccgctgggcg ccgggccaga
121 cgccgaggca cagctgcgga ggctgcagct gagcgcggac cctgagaggc ctgggcgctt
181 ccggctggag ctgctgggcg cgggacctgg ggcggttaat ttggagtggc ccctggagtc
241 agtttcctac accatccgag gccccaccca gcacgagcta cagcctccac caggagggcc
301 tggaaccctc agcctgcact tcctcaaccc tcaggaagct cagcggtggg cagtcctagt
361 ccgaggtgcc accgtggaag gacagaatgg cagcaagagc aactcaccac cagccttggg
421 cccagaagca tgccctgtct ccctgcccag tcccccggaa gcctccacac tcaagggccc
481 tccacctgag gcagatcttc ctaggagccc tggaaacttg acggagagag aagagctggc
541 agggagcctg gcccgggcta ttgcaggtgg agacgagaag ggggcagccc aagtggcagc
601 cgtcctggcc cagcatcgtg tggccctgag tgttcagctt caggaggcct gcttcccacc
661 tggccccatc aggctgcagg tcacacttga agacgctgcc tctgccgcat ccgccgcgtc
721 ctctgcacac gttgccctgc aggtccaccc ccactgcact gttgcagctc tccaggagca
781 ggtgttctca gagctcggtt tcccgccagc cgtgcaacgc tgggtcatcg gacggtgcct
841 gtgtgtgcct gagcgcagcc ttgcctctta cggggttcgg caggatgggg accctgcttt
901 cctctacttg ctgtcagctc ctcgagaagc cccagccaca ggacctagcc ctcagcaccc
961 ccagaagatg gacggggaac ttggacgctt gtttccccca tcattggggc tacccccagg
1021 cccccagcca gctgcctcca gcctgcccag tccactccag cccagctggt cctgtccttc
1081 ctgcaccttc atcaatgccc cagaccgccc tggctgtgag atgtgtagca cccagaggcc
1141 ctgcacttgg gacccccttg ctgcagcttc cacctagcag ccaccagagg ttacaagggg
1201 agagtggccc ttccctcaca agtccgacat ctccaggccc ccactgaact ccggggacct
1261 ctactgactg cttgctggga cagtcaccag ggttgggggg aagggccaca aaatgaaacc
1321 attaaagacc cttaagagta aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
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