LOCUS BC033907 2898 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens SHC (Src homology 2 domain containing) family, member
4, mRNA (cDNA clone MGC:34023 IMAGE:4827789), complete cds.
ACCESSION BC033907
VERSION BC033907.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2898)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2898)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC033907.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: a Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 44680158.
FEATURES Location/Qualifiers
source 1..2898
/db_xref="H-InvDB:HIT000051147"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:34023 IMAGE:4827789"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2898
/gene="SHC4"
/gene_synonym="MGC34023"
/gene_synonym="RaLP"
/db_xref="GeneID:399694"
/db_xref="HGNC:HGNC:16743"
CDS 430..2322
/gene="SHC4"
/gene_synonym="MGC34023"
/gene_synonym="RaLP"
/codon_start=1
/product="SHC (Src homology 2 domain containing) family,
member 4"
/protein_id="AAH33907.1"
/db_xref="GeneID:399694"
/db_xref="HGNC:HGNC:16743"
/translation="MRERGQDSLAGLVLYVGLFGHPGMLHRAKYSRFRNESITSLDEG
SSGGSVGDKGSPQPPHPALAPHLPTEDATLPSQESPTPLCTLIPRMASMKLANPATLL
SLKNFCLGTKEVPRLKLQESRDPGSSGPSSPETSLSRSGTAPPPQQDLVGHRATALTP
DSCPLPGPGEPTLRSRQDRHFLQHLLGMGMNYCVRYMGCVEVLQSMRSLDFGMRTQVT
REAISRLCEAVPGANGAIKKRKPPVEFLSTVLGKSNLQFSGMNIKLTISTCSLTLMNL
DNQQIIANHHMQSISFASGGDPDTTDYVAYVAKDPVNQRACHILECHNGMAQDVISTI
GQAFELRFKQYLKNPSLNTSCESEEVHIDSHAEEREDHEYYNEIPGKQPPVGGVSDMR
IKVQATEQMAYCPIQCEKLCYLPGNSKCSSVYENCLEQSRAIGNVHPRGVQSQRGTSL
LKHTCRVDLFDDPCYINTQALQSTPGSAGNQRSAQPLGSPWHCGKAPETVQPGATAQP
ASSHSLPHIKQQLWSEECYHGKLSRKAAESLLVKDGDFLVRESATSPGQYVLSGLQGG
QAKHLLLVDPEGKVRTKDHVFDNVGHLIRYHMDNSLPIISSGSEVSLKQPVRKDNNPA
LLHSNK"
BASE COUNT 818 a 683 c 733 g 664 t
ORIGIN
1 agaacagaag gctggggtga gggtgggagt cgggtgctaa atatttctac taggctcctg
61 caaggctagt gatgcagcgg gccccccgac cggcgctcgc ccgggttctg cgcctaagag
121 ttggccgtga gcgacccgcg ccgccgggag cctgggtcta ggctctcccg acaaggattc
181 caaggcgaga acactggtgc ctctgcctgg gccagggagg gactgaaatc agagcagggg
241 aggcgtttcc cccatgggct gtcaccctta aggggccggg agccgaggtg ggcgagctcg
301 agagcagagt tggagaggtg gctgctgtga gttgcatcgg gcgttgaggt atctgatgtc
361 tgcaccgttt atctaccaga cgacgaggcg atttatgcaa cagtatcctg tttcagcact
421 gccaaggcta tgcgagaacg cggccaggac agcctggcag gactcgtgct gtatgtagga
481 ctcttcgggc accccgggat gctgcacagg gccaagtaca gccgctttcg gaacgagtcg
541 atcacgtcct tggacgaagg tagctccgga ggctcggtcg gggacaaggg ctcgccgcag
601 cctccccacc ccgccctggc acctcacctg ccgactgaag atgccacctt gccgtcgcag
661 gagagcccca ccccactgtg caccttgatc ccccgcatgg caagcatgaa gctggccaac
721 ccggccactt tgctgagtct gaaaaacttt tgcctgggta ccaaagaggt gcctcggctg
781 aagctccagg aaagccggga cccaggttcc agcggcccct cttccccaga aaccagttta
841 agtaggtccg ggactgcacc tccaccgcag caggacctgg tgggacacag ggcaaccgcc
901 ctaacccctg attcgtgccc gcttcctggc cctggggagc caacacttag gagcaggcag
961 gacaggcact ttctacagca cctgttgggg atgggcatga actactgtgt gaggtacatg
1021 ggctgtgttg aagtgctgca atcaatgaga tcactggatt ttggaatgag aacccaagtt
1081 acaagggaag caataagtcg cctgtgtgaa gctgtccccg gggcaaatgg agccattaaa
1141 aagcgaaagc ctccagttga gttcctatca acagtccttg gcaaaagtaa tcttcagttt
1201 tcaggaatga atataaaact gaccatctca acatgcagtc tcacattgat gaatcttgac
1261 aaccaacaga ttattgcaaa tcatcatatg cagtctattt catttgcctc tggaggggat
1321 cctgatacta cagactatgt tgcctacgta gctaaagatc cagttaatca acgagcctgt
1381 cacatattgg aatgccacaa tggaatggcc caagacgtca taagtaccat agggcaggct
1441 tttgaactcc ggtttaaaca gtacttgaaa aatccttctt tgaatacttc ttgtgaaagt
1501 gaggaggtgc atattgatag ccatgccgag gagagagaag atcatgaata ttacaatgaa
1561 attccaggga agcagccacc agtaggtggt gtttcagata tgcggatcaa agttcaagcc
1621 acggaacaaa tggcttactg ccccatacag tgtgaaaagt tgtgctattt gcctggaaac
1681 tccaagtgca gcagtgtata tgagaactgt ttagaacaaa gcagggcaat aggtaatgtc
1741 catccaagag gggtgcagtc ccagcgaggt acctcattat tgaagcacac gtgccgagtg
1801 gatctctttg atgacccctg ctacattaat acacaggctc ttcaaagtac acctggctct
1861 gctggaaatc aaaggtcagc ccaaccactg gggagcccat ggcactgcgg aaaggcacca
1921 gaaactgttc agccgggtgc cacagcccag cctgccagct cacattcttt gccacacatt
1981 aagcagcagc tgtggagcga agaatgctat catggcaagc tgagcaggaa ggcggcagag
2041 agcctcttgg taaaggatgg ggactttttg gttcgagaga gtgcaacatc ccctggccaa
2101 tatgtgctga gtggactaca gggaggccaa gcaaaacatc ttctcctggt ggatcctgaa
2161 ggcaaggtga ggaccaagga tcatgtattt gataatgtcg gccaccttat cagataccat
2221 atggataaca gtttgccaat catctcctct ggaagcgaag taagccttaa acaaccagtg
2281 agaaaagata ataatccagc acttttgcat tccaacaaat gacagtattg aagcaccatc
2341 acactgatat ttcaagaaac cccattttgt attaggacac aaagataatt taaactttgt
2401 ttgtagataa aatagagcac aaactgtgaa gtgcatcttt ccaagaccat catggaccag
2461 gtcctctata aaatgaagaa ctaacaaaaa ttagtcttca gaaatgaaaa tcagaaaaga
2521 ggaagagggt tggtcatttt aaaagaaatt atatgtatgc acggatgtca ctttttaagg
2581 ccatattgca ttgataacaa gctaaaagca caactaaaat ttcacatgct aacgacaact
2641 tgaatgaact gctggggcag tggtatgtgc ctttcaactt gataatttgg gggacatttt
2701 catattggga gattaattct aagtatcttc atgttctatg actatagaac catttgccaa
2761 aaaaaaaagc ttttcttgct acaaaaaata agcaattttc ttgagcctta ttgactttat
2821 tacattttct gtttagcagc atttttcact gcaatgttaa aataaatatg acattgaatt
2881 cgaaaaaaaa aaaaaaaa
//