LOCUS BC033902 4663 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens calsyntenin 1, mRNA (cDNA clone MGC:33741
IMAGE:5263192), complete cds.
ACCESSION BC033902
VERSION BC033902.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4663)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4663)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC033902.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: h Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57242754.
FEATURES Location/Qualifiers
source 1..4663
/db_xref="H-InvDB:HIT000042024"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:33741 IMAGE:5263192"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4663
/gene="CLSTN1"
/gene_synonym="alcalpha1"
/gene_synonym="alcalpha2"
/gene_synonym="CSTN1"
/gene_synonym="KIAA0911"
/gene_synonym="PIK3CD"
/gene_synonym="XB31alpha"
/db_xref="GeneID:22883"
/db_xref="HGNC:HGNC:17447"
CDS 252..3167
/gene="CLSTN1"
/gene_synonym="alcalpha1"
/gene_synonym="alcalpha2"
/gene_synonym="CSTN1"
/gene_synonym="KIAA0911"
/gene_synonym="PIK3CD"
/gene_synonym="XB31alpha"
/codon_start=1
/product="calsyntenin 1"
/protein_id="AAH33902.1"
/db_xref="GeneID:22883"
/db_xref="HGNC:HGNC:17447"
/translation="MLRRPAPALAPAARLLLAGLLCGGGVWAARVNKHKPWLEPTYHG
IVTENDNTVLLDPPLIALDKDAPLRFAGEICGFKIHGQNVPFDAVVVDKSTGEGVIRS
KEKLDCELQKDYSFTIQAYDCGKGPDGTNVKKSHKATVHIQVNDVNEYAPVFKEKSYK
ATVIEGKQYDSILRVEAVDADCSPQFSQICSYEIITPDVPFTVDKDGYIKNTEKLNYG
KEHQYKLTVTAYDCGKKRATEDVLVKISIKPTCTPGWQGWNNRIEYEPGTGALAVFPN
IHLETCDEPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSGS
LNWTMGLPTDNGHDSDQVFEFNGTQAVRIPDGVVSVSPKEPFTISVWMRHGPFGRKKE
TILCSSDKTDMNRHHYSLYVHGCRLIFLFRQDPSEEKKYRPAEFHWKLNQVCDEEWHH
YVLNVEFPSVTLYADGTSHEPFSVTEDYPLHPSKIETQLVVGACWQEFSGVENDNETE
PVTVACAGGDLHMTQFFRGNLAGLTLRSGKLADKKVIDCLYTCKEGLDLQVLEDSGRG
VQIQAHRSQLVLTLEGEDLGELDKAMQHISYLNSRQFPTPGIRRLKITSTIKCFNEAT
CISVPPVDGYVMVLQPEEPKISLSGVHHFARAASEFESSEGVFLFPELRIISTITREV
EPEGDGAEDPTVQESLVSEEIVHDLDTCEVTVEGEELNHEQESLEVDMARLQQKGIEV
SSSELGMTFTGVDTMASYEEVLHLLRYRNWHARSLLDRKFKLICSELNGRYISNEFKV
EVNVIHTANPMEHANHMAAQPQFVHPEHRSFVDLSGHNLANPHPFAVVHSTATVVIVV
CVSSLVFMIILGVFRIRAAHRRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSS
EEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDSTLSY"
BASE COUNT 1057 a 1330 c 1324 g 952 t
ORIGIN
1 gagagagagc gccgccgcca tcttagttgc tgccgctgcc ttcagcaaga cgctgctctg
61 aggcggggag ggcgccgcgt cctgagcgcg cggcccagcg tcacggcggc ggcggcggcg
121 gctcctcctt ggacccccgg agctccccgc gccgcggagc agctggcccc aggcccctag
181 agccccgaga gctccgagag ctccgctcgg cgtcccgcgc gcctccctgc cgctcccgcc
241 ccgggctggc gatgctgcgc cgccccgctc ccgcgctggc cccggccgcc aggctgctgc
301 tggccgggct gctgtgcggc ggcggggtct gggccgcgcg agttaacaag cacaagccct
361 ggctggagcc cacctaccac ggcatagtca cagagaacga caacaccgtg ctcctcgacc
421 ccccactgat cgcgctggat aaagatgcgc ctctgcgatt tgcaggtgag atttgtggat
481 ttaaaattca cgggcagaat gtcccctttg atgcagtggt agtggataaa tccactggtg
541 agggagtcat tcgctccaaa gagaaactgg actgtgagct gcagaaagac tattcattca
601 ccatccaggc ctatgattgt gggaagggac ctgatggcac caacgtgaaa aagtctcata
661 aagcaactgt tcatattcag gtgaacgacg tgaatgagta cgcgcccgtg ttcaaggaga
721 agtcctacaa agccacggtc atcgagggga agcagtacga cagcattttg agggtggagg
781 ccgtggatgc cgactgctcc cctcagttca gccagatttg cagctacgaa atcatcactc
841 cagacgtgcc ctttactgtt gacaaagatg gttatataaa aaacacagag aaattaaact
901 acgggaaaga acatcaatat aagctgaccg tcactgccta tgactgtggg aagaaaagag
961 ccacagaaga tgttttggtg aagatcagca ttaagccaac ctgcacccct gggtggcaag
1021 gatggaacaa caggattgag tatgagccgg gcaccggcgc gttggccgtc tttccaaata
1081 tccacctgga gacatgtgac gagccagtcg cctcagtaca ggccacagtg gagctagaaa
1141 ccagccacat agggaaaggc tgcgaccgag acacctactc agagaagtcc ctccaccggc
1201 tctgtggtgc ggccgcgggc actgccgagc tgctgccatc cccgagtgga tccctcaact
1261 ggaccatggg cctgcccacc gacaatggcc acgacagcga ccaggtgttt gagttcaacg
1321 gcacccaggc agtgaggatc ccggatggcg tcgtgtcggt cagccccaaa gagccgttca
1381 ccatctcggt gtggatgaga catgggccat tcggcaggaa gaaggagaca attctttgca
1441 gttctgataa aacagatatg aatcggcacc actactccct ctatgtccac gggtgccggc
1501 tgatcttcct cttccgtcag gatccttctg aggagaagaa atacagacct gcagagttcc
1561 actggaagtt gaatcaggtc tgtgatgagg aatggcacca ctacgtcctc aatgtagaat
1621 tcccgagtgt gactctctat gcggatggca cgtcccacga gcccttctct gtgactgagg
1681 attacccgct ccatccatcc aagatagaaa ctcagctcgt ggtgggggct tgctggcaag
1741 agttttcagg agttgaaaat gacaatgaaa ctgagcctgt gactgtggcc tgtgcaggtg
1801 gcgacctgca catgacccag tttttccgag gcaatctggc tggcttaact ctccgttccg
1861 ggaaactcgc ggataagaag gtgatcgact gtctgtatac ctgcaaggag gggctggacc
1921 tgcaggtcct cgaagacagt ggcagaggcg tgcagatcca agcacaccgc agccagttgg
1981 tattgacctt ggagggagaa gacctcgggg aattggataa ggccatgcag cacatctcgt
2041 acctgaactc ccggcagttc cccacgcccg gaattcgcag actcaaaatc accagcacaa
2101 tcaagtgttt taacgaggcc acctgcattt cggtcccccc ggtagatggc tacgtgatgg
2161 ttttacagcc cgaggagccc aagatcagcc tgagtggcgt ccaccatttt gcccgagcag
2221 cttctgaatt tgaaagctca gaaggggtgt tccttttccc tgagcttcgc atcatcagca
2281 ccatcacgag agaagtggag cctgaagggg acggggctga ggaccccaca gttcaagaat
2341 cactggtgtc cgaggagatc gtgcacgacc tggatacctg tgaggtcacg gtggagggag
2401 aggagctgaa ccacgagcag gagagcctgg aggtggacat ggcccgcctg cagcagaagg
2461 gcattgaagt gagcagctct gaactgggca tgaccttcac aggcgtggac accatggcca
2521 gctacgagga ggttttgcac ctgctgcgct atcggaactg gcatgccagg tccttgcttg
2581 accggaagtt taagctcatc tgctcagagc tgaatggccg ctacatcagc aacgaattta
2641 aggtggaggt gaatgtaatc cacacggcca accccatgga acacgccaac cacatggctg
2701 cccagccaca gttcgtgcac ccggaacacc gctcctttgt tgacctgtca ggccacaacc
2761 tggccaaccc ccacccgttc gcagtcgtcc acagcactgc gacagttgtg atcgtggtgt
2821 gcgtcagctc cctggtgttc atgattatcc tgggggtatt tcggatccgg gccgcacatc
2881 ggcggaccat gcgggatcag gacaccggga aggagaacga gatggactgg gacgactctg
2941 ccctgaccat caccgtcaac ccgatggaga cctatgagga ccagcacagc agtgaggagg
3001 aggaggaaga ggaagaggaa gaggaaagcg aggacggcga agaagaggat gacatcacca
3061 gcgccgagtc ggagagcagc gaggaggagg agggggagca gggcgacccc cagaacgcaa
3121 cccggcagca gcagctggag tgggatgact ccaccctcag ctactgaccc gtgcccccgg
3181 ccacctcggt ttctgctttc gaagactctg ctgccatccg ttctcccagt cccaagggtc
3241 cacgatgtac aaagtcattt cggccagtag gtgtgcagac ccctacccgc cacgatcgtc
3301 gctgtgcttg gtgtgtagga ccctaggctc cccgcccacc ctctgcctgg tcgcgctctt
3361 cagtcccacg aggagctgac acgtcctctc tggccgccat ccggctcgca caggggcctc
3421 ccagcgcctc aggccccgcg tttgtgtctg gagtctcccc ccggggagag gacactggcc
3481 cctcgcactc cagaaaagcc atgccagctg ggctcgttga caaagggtaa aacatgctca
3541 ctcccacccg gtaatcattt ttttcttttt ttaaaaaaag tttttatttt ttccaaacta
3601 gtgcatgtat aaataatggc aggatggggg gtactgtgta gatgattaac tgacttttta
3661 atattttgta aataaatcgg attccttgtg tcctttgtgc tagtgtaacc cgggactgga
3721 atgtaaagtg aagttcggag ctctgagcac gggctcttcc cgccgggtcc tccctcccca
3781 gaccccagag ggagaggccc accccgccca gccccgcccc agcccctgct caggtctgag
3841 tatggctggg agtcgggggc cacaggcctc tagctgtgct gctcaagaga ctggatcagg
3901 gtagctacaa gtggccgggc cttgcctttg ggattctacc tgttcctaat ttggtgtggg
3961 gtgcggggtc cctggcccct tttccacact cctcctccga cagcagctcc ctgggcagtg
4021 gcctggtctc accgtgtgca gccttgtggt ttatgcttaa atgtacattt tcctgctggt
4081 aaaaggagaa actgagaggt gtcctgcaga ccggctgacc actccttttg gagacggcag
4141 gaggcctgag cgatccgtac tcagaacgtc caggagagac gcatggcccg aagtcaaagt
4201 gctggaattt tccaaaacag cctgttctct cctctctcct ccccagagca ccccctgcca
4261 tcaggggggc tgaaatccct ctcccccagg agccctgctg ctttgcttgg tggtagggca
4321 ggagagcaaa caaacagtca tggtctaaaa cccacatagc actttgctct tagttacatg
4381 taaaatttta gatttctaaa acaggtgggc aatcattttg aatactgttc tgtgaccctg
4441 actgctagtt ctgaggacac tggtggctgt gctatgtgtg gccatcctcc atgtcccgtc
4501 cctgtagctg ctctgtttag acagcggaca gacgctcacg cccaggggat gtcctcacgc
4561 tgtcgccgcg cggtttccct tcgcagatgt gtatactcat gataggtaag aaagtgtatc
4621 cgctacaata aagttctggt tctaaccaaa aaaaaaaaaa aaa
//