LOCUS BC033861 1023 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:44900
IMAGE:5171094), complete cds.
ACCESSION BC033861
VERSION BC033861.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1023)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1023)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: j Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40254987.
FEATURES Location/Qualifiers
source 1..1023
/db_xref="H-InvDB:HIT000041998"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44900 IMAGE:5171094"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1023
/gene="LSMD1"
/gene_synonym="MGC14151"
/gene_synonym="PFAAP2"
/db_xref="GeneID:84316"
/db_xref="HGNC:HGNC:28212"
CDS 432..953
/gene="LSMD1"
/gene_synonym="MGC14151"
/gene_synonym="PFAAP2"
/codon_start=1
/product="LSM domain containing 1"
/protein_id="AAH33861.1"
/db_xref="GeneID:84316"
/db_xref="HGNC:HGNC:28212"
/translation="MAVAVGVRAAPVLGLARALVLGLRGSQAARWRGWGTAAPGSLWA
LCECPAGCRELWFRGRAAWAARSERLLHPAQDSDGEREDSAAERARQQLEALLNKTMR
IRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSI
EVQRESLTGPPYL"
BASE COUNT 246 a 251 c 334 g 192 t
ORIGIN
1 gcagagaacg aatacgctcc gttttaattc agtggcctgg gctacatggg atatttagga
61 cagactatct ctctgagaca gaaaaacaag ggaggaggca gtatgaaaga atgtattctc
121 gctaaattcc agtttctaaa ggatgtgtaa gaaaccagag gtaaaggtct cgcgatatct
181 taagacatcc ggcgtagtac gcttcagtga gccacagcgc tagagaagta ggagaagctc
241 gcgagatctg tgccgttgcc gaggagacta ggagggggag gagaggggat ctcgcgaaag
301 gaaagaggtc gggagcgctc gcgagatctc ggaccaccca acctgaaagg tgcttaggaa
361 gttgaaaggc ccagaggagg cctccgggca aatggccgga gctggaccga ccatgctgct
421 acgagaagag aatggctgtt gcagtcggcg tcagagcagc tccagtgctg gggttagcac
481 gggctctggt tctgggactg aggggcagtc aagcagcaag atggaggggg tggggaactg
541 cagctcccgg cagcctctgg gctttgtgtg agtgccccgc gggctgccgg gagctgtggt
601 tccgcgggcg ggcagcctgg gctgcgcggt ctgagcgctt gttacacccc gcgcaggatt
661 cggacggaga gcgcgaggac tcggcggctg agcgcgcccg acagcagcta gaggcgctgc
721 tcaacaagac tatgcgcatt cgcatgacag atggacggac actggtcggc tgcttcctct
781 gcactgaccg tgactgcaat gtcatcctgg gctcggcgca ggagttcctc aagccgtcgg
841 attccttctc tgccggggag ccccgtgtgc tgggcctggc catggtaccc ggacaccaca
901 tcgtttccat tgaggtgcag agggagagtc tgaccgggcc tccgtatctc tgaccacgat
961 ggcgcttacc tttcagactt cattaaactt atgaccgaaa aaaaaaaaaa aaaaaaaaaa
1021 aaa
//