LOCUS BC033733 2756 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens calpain 11, mRNA (cDNA clone MGC:45189 IMAGE:5170266),
complete cds.
ACCESSION BC033733
VERSION BC033733.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2756)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2756)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: i Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 45446753.
FEATURES Location/Qualifiers
source 1..2756
/db_xref="H-InvDB:HIT000041926"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45189 IMAGE:5170266"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2756
/gene="CAPN11"
/gene_synonym="calpain11"
/db_xref="GeneID:11131"
/db_xref="HGNC:HGNC:1478"
/db_xref="MIM:604822"
CDS 121..2229
/gene="CAPN11"
/gene_synonym="calpain11"
/codon_start=1
/product="calpain 11"
/protein_id="AAH33733.1"
/db_xref="GeneID:11131"
/db_xref="HGNC:HGNC:1478"
/db_xref="MIM:604822"
/translation="MVAHINNSRLKAKGVGQHDNAQNFGNQSFEELRAACLRKGELFE
DPLFPAEPSSLGFKDLGPNSKNVQNISWQRPKDIINNPLFIMDGISPTDICQGILGDC
WLLAAIGSLTTCPKLLYRVVPRGQSFKKNYAGIFHFQIWQFGQWVNVVVDDRLPTKND
KLVFVHSTERSEFWSALLEKAYAKLSGSYEALSGGSTMEGLEDFTGGVAQSFQLQRPP
QNLLRLLRKAVERSSLMGCSIEVTSDSELESMTDKMLVRGHAYSVTGLQDVHYRGKME
TLIRVRNPWGRIEWNGAWSDSAREWEEVASDIQMQLLHKTEDGEFWMSYQDFLNNFTL
LEICNLTPDTLSGDYKSYWHTTFYEGSWRRGSSAGGCRNHPGTFWTNPQFKISLPEGD
DPEDDAEGNVVACTCLVALMQKNWRHARQQGAQLQTIGFVLYAVPKEFQNIQDVHLKK
EFFTKYQDHGFSEIFTNSREVSSQLRLPPGEYIIIPSTFEPHRDADFLLRVFTEKHSE
SWELDEVNYAEQLQEEKVSEDDMDQDFLHLFKIVAGEGKEIGVYELQRLLNRMAIKFK
SFKTKGFGLDACRCMINLMDKDGSGKLGLLEFKILWKKLKKWMDIFRECDQDHSGTLN
SYEMRLVIEKAGIKLNNKVMQVLVARYADDDLIIDFDSFISCFLRLKTMFTFFLTMDP
KNTGHICLSLEQWLQMTMWG"
BASE COUNT 697 a 723 c 751 g 585 t
ORIGIN
1 gccaccagca tgctgtactc cccagggccg agtcttccgg agtcagcaga gagcctggat
61 ggatcacagg aggataagcc tcggggctca tgtgcggagc ccacttttac tgatacggga
121 atggtggctc acataaacaa cagccggctc aaggccaagg gcgtgggcca gcacgacaac
181 gcccagaact ttggtaacca gagctttgag gagctgcgag cagcctgtct aagaaagggg
241 gagctcttcg aggacccctt attccctgct gaacccagct cactgggctt caaggacctg
301 ggccccaact ccaaaaatgt gcagaacatc tcctggcagc ggcccaagga tatcataaac
361 aaccctctat tcatcatgga tgggatttct ccaacagaca tctgccaggg gatcctcggg
421 gactgctggc tgctggctgc catcggctcc cttaccacct gccccaaact gctataccgc
481 gtggtgccca gaggacagag cttcaagaaa aactatgctg gcatcttcca ttttcagatt
541 tggcagtttg gacagtgggt gaacgtggtg gtagatgacc ggctgcccac aaagaatgac
601 aagctggtgt ttgtgcactc aaccgaacgc agtgagttct ggagtgccct gctggagaag
661 gcgtatgcca agctgagtgg gtcctatgaa gcattgtcag ggggcagtac catggagggc
721 cttgaggact tcacaggagg cgtggcccag agcttccaac tccagaggcc ccctcagaac
781 ctgctcaggc tccttaggaa ggccgtggag cgatcctccc tcatgggttg ctccattgaa
841 gtcaccagtg atagtgaact ggaatccatg actgacaaga tgctggtgag agggcacgct
901 tactctgtga ctggccttca ggatgtccac tacagaggca aaatggaaac actgattcgg
961 gtccggaatc cctggggccg gattgagtgg aatggagctt ggagtgacag tgccagggag
1021 tgggaagagg tggcctcaga catccagatg cagctgctgc acaagacgga ggacggggag
1081 ttctggatgt cctaccaaga tttcctgaac aacttcacgc tcctggagat ctgcaacctc
1141 acgcctgata cactctctgg ggactacaag agctactggc acaccacctt ctacgagggc
1201 agctggcgca gaggcagctc cgcagggggc tgcaggaacc accctggcac gttctggacc
1261 aacccccagt ttaagatctc tcttcctgag ggggatgacc cagaggatga cgcagagggc
1321 aatgttgtgg cctgcacctg cctggtggcc ctaatgcaga agaactggcg gcatgcacgg
1381 cagcagggag cccagctgca gaccattggc tttgtcctct acgcggtccc aaaagagttt
1441 cagaacattc aggatgtcca cttgaagaag gaattcttca cgaagtatca ggaccacggc
1501 ttctcagaga tcttcaccaa ctcacgggag gtgagcagcc aactccggct gcctccgggg
1561 gaatatatca ttattccctc cacctttgag ccacacagag atgctgactt cctgcttcgg
1621 gtcttcaccg agaagcacag cgagtcatgg gaattggatg aagtcaacta tgctgagcaa
1681 ctccaagagg aaaaggtctc tgaggatgac atggaccagg acttcctaca tttgtttaag
1741 atagtggcag gagagggcaa ggagataggg gtgtatgagc tccagaggct gctcaacagg
1801 atggccatca aattcaaaag cttcaagacc aagggctttg gcctggatgc ttgccgctgc
1861 atgatcaacc tcatggataa agatggctct ggcaagctgg ggcttctaga gttcaagatc
1921 ctgtggaaaa aactcaagaa atggatggac atcttcagag agtgtgacca ggaccattca
1981 ggcaccttga actcctatga gatgcgcctg gttattgaga aagcaggcat caagctgaac
2041 aacaaggtaa tgcaggtcct ggtggccagg tatgcagatg atgacctgat catagacttt
2101 gacagcttca tcagctgttt cctgaggcta aagaccatgt tcacattctt tctaaccatg
2161 gaccccaaga atactggcca tatttgcttg agcctggaac agtggctgca gatgaccatg
2221 tggggataga ggcgctgtag gagcctggtc atctctacca gcagcagcag cagcgaggtt
2281 ctagcccagg agggtggggt gcttcttgta gccctcagct ctccggtctc tgctgatgaa
2341 atgggctcca ggtggcagtg cccgggtccc aggtgccgtg tttactgcag cagtgggacc
2401 tccgtgccca ctcccccagc tcagaggctt tctctttttt ccccaacccg gcttctgatg
2461 gctggctttc ccccaccatc gctctctcag agtatatttt actaaagagt agttgatgct
2521 tccccagggt ccccctggct ggggaggcca agaataggga agggacttgt agcccgtttc
2581 ttaccctcca tgcttgctgt cctgctcaca cctacctgct gaccacccat cctggcacag
2641 cctctgtttt cctccccatc tgtggatact attctaataa atagcacatg ccattggcta
2701 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaa
//