LOCUS BC033721 2693 bp mRNA linear HUM 01-SEP-2008
DEFINITION Homo sapiens SPARC-like 1 (hevin), mRNA (cDNA clone MGC:45264
IMAGE:4939390), complete cds.
ACCESSION BC033721
VERSION BC033721.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2693)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2693)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: David N. Louis, M.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: g Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21359870.
FEATURES Location/Qualifiers
source 1..2693
/db_xref="H-InvDB:HIT000041919"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45264 IMAGE:4939390"
/tissue_type="Brain, anaplastic oligodendroglioma with
1p/19q loss"
/clone_lib="NCI_CGAP_Brn67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2693
/gene="SPARCL1"
/gene_synonym="PIG33"
/gene_synonym="SC1"
/db_xref="GeneID:8404"
/db_xref="HGNC:HGNC:11220"
/db_xref="MIM:606041"
CDS 246..2240
/gene="SPARCL1"
/gene_synonym="PIG33"
/gene_synonym="SC1"
/codon_start=1
/product="SPARC-like 1 (hevin)"
/protein_id="AAH33721.1"
/db_xref="GeneID:8404"
/db_xref="HGNC:HGNC:11220"
/db_xref="MIM:606041"
/translation="MKTGLFFLCLLGTAAAIPTNARLLSDHSKPTAETVAPDNTAIPS
LRAEDEENEKETAVSTEDDSHHKAEKSSVLKSKEESHEQSAEQGKSSSQELGLKDQED
SDGDLSVNLEYAPTEGTLDIKEDMSEPQEKKLSENTDFLAPGVSSFTDSNQQESITKR
EENQEQPRNYSHHQLNRSSKHSQGLRDQGNQEQDPNISNGEEEEEKEPGEVGTHNDNQ
ERKTELPREHANSKQEEDNTQSDDILEESDQPTQVSKMQEDEFDQGNQEQEDNSNAEM
EEENASNVNKHIQETEWQSQEGKTGLEAISNHKETEEKTVSEALLMEPTDDGNTTPRN
HGVDDDGDDDGDDGGTDGPRHSASDDYFIPSQAFLEAERAQSIAYHLKIEEQREKVHE
NENIGTTEPGEHQEAKKAENSSNEEETSSEGNMRVHAVDSCMSFQCKRGHICKADQQG
KPHCVCQDPVTCPPTKPLDQVCGTDNQTYASSCHLFATKCRLEGTKKGHQLQLDYFGA
CKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNEKQRNKVKKIYLDEKR
LLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHSELAPLRASLVPME
HCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLLF"
BASE COUNT 932 a 535 c 589 g 637 t
ORIGIN
1 ccacgcgtcc gattctcgtc tgtcacttca gacccccact agttgacaga gcagcagaat
61 ttcaactcca gtagacttga atgtgcctct gggcaaagaa gcagagctaa cgaggaaagg
121 gatttaaaga gtttttcttg ggtgtttgtc aaacttttat tccctgtctg tgtgcagagg
181 ggattcaact tcaatttttc tgcagtggct ctgagtccag ccccttactt aaagatctgg
241 aaagcatgaa gactgggctt tttttcctat gtctcttggg aactgcagct gcaatcccga
301 caaatgcaag attattatct gatcattcca aaccaactgc tgaaacggta gcacccgaca
361 acactgcaat ccccagttta agggctgaag atgaagaaaa tgaaaaagaa acagcagtat
421 ccacagaaga cgattcccac cataaggctg aaaaatcatc agtactaaag tcaaaagagg
481 aaagccatga acagtcagca gaacagggca agagttctag ccaagagctg ggattgaagg
541 atcaagagga cagtgatggt gacttaagtg tgaatttgga gtatgcacca actgaaggta
601 cattggacat aaaagaagat atgagtgagc ctcaggagaa aaaactctca gagaacactg
661 attttttggc tcctggtgtt agttccttca cagattctaa ccaacaagaa agtatcacaa
721 agagagagga aaaccaagaa caacctagaa attattcaca tcatcagttg aacaggagca
781 gtaaacatag ccaaggccta agggatcaag gaaaccaaga gcaggatcca aatatttcca
841 atggagaaga ggaagaagaa aaagagccag gtgaagttgg tacccacaat gataaccaag
901 aaagaaagac agaattgccc agggagcatg ctaacagcaa gcaggaggaa gacaataccc
961 aatctgatga tattttggaa gagtctgatc aaccaactca agtaagcaag atgcaggagg
1021 atgaatttga tcagggtaac caagaacaag aagataactc caatgcagaa atggaagagg
1081 aaaatgcatc gaacgtcaat aagcacattc aagaaactga atggcagagt caagagggta
1141 aaactggcct agaagctatc agcaaccaca aagagacaga agaaaagact gtttctgagg
1201 ctctgctcat ggaacctact gatgatggta ataccacgcc cagaaatcat ggagttgatg
1261 atgatggcga tgatgatggc gatgatggcg gcactgatgg ccccaggcac agtgcaagtg
1321 atgactactt catcccaagc caggcctttc tggaggccga gagagctcaa tccattgcct
1381 atcacctcaa aattgaggag caaagagaaa aagtacatga aaatgaaaat ataggtacca
1441 ctgagcctgg agagcaccaa gaggccaaga aagcagagaa ctcatcaaat gaggaggaaa
1501 cgtcaagtga aggcaacatg agggtgcatg ctgtggattc ttgcatgagc ttccagtgta
1561 aaagaggcca catctgtaag gcagaccaac agggaaaacc tcactgtgtc tgccaggatc
1621 cagtgacttg tcctccaaca aaaccccttg atcaagtttg tggcactgac aatcagacct
1681 atgctagttc ctgtcatcta ttcgctacta aatgcagact ggaggggacc aaaaaggggc
1741 atcaactcca gctggattat tttggagcct gcaaatctat tcctacttgt acggactttg
1801 aagtgattca gtttcctcta cggatgagag actggctcaa gaatatcctc atgcagcttt
1861 atgaagccaa ctctgaacac gctggttatc taaatgagaa gcagagaaat aaagtcaaga
1921 aaatttacct ggatgaaaag aggcttttgg ctggggacca tcccattgac cttctcttaa
1981 gggactttaa gaaaaactac cacatgtatg tgtatcctgt gcactggcag tttagtgaac
2041 ttgaccaaca ccctatggat agagtcttga cacattctga acttgctcct ctgcgagcat
2101 ctctggtgcc catggaacac tgcataaccc gtttctttga ggagtgtgac cccaacaagg
2161 ataagcacat caccctgaag gagtggggcc actgctttgg aattaaagaa gaggacatag
2221 atgaaaatct cttgttttga acgaagattt taaagaactc aactttccag catcctcctc
2281 tgttctaacc acttcagaaa tatatgcagc tgtgatactt gtagatttat atttagcaaa
2341 atgttagcat gtatgacaag acaatgagag taattgcttg acaacaacct atgcaccagg
2401 tatttaacat taactttgga aacaaaaatg tacaattaag taaagtcaac atatgcaaaa
2461 tactgtacat tgtgaacaga agtttaattc atagtaattt cactctctgc attgacttat
2521 gagataatta atgattaaac tattaatgat aaaaataatg catttgtatt gttcataata
2581 tcatgtgcac ttcaagaaaa tggaatgcta ctcttttgtg gtttacgtgt attattttca
2641 atatcttaat accctaataa agagtccata aaaatccaaa aaaaaaaaaa aaa
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