LOCUS BC033630 1812 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sorting nexin 16, mRNA (cDNA clone MGC:44985
IMAGE:5224216), complete cds.
ACCESSION BC033630
VERSION BC033630.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1812)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1812)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JUL-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: a Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23238247.
FEATURES Location/Qualifiers
source 1..1812
/db_xref="H-InvDB:HIT000041875"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:44985 IMAGE:5224216"
/tissue_type="Pancreas, Spleen, adult pooled"
/clone_lib="NIH_MGC_120"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1812
/gene="SNX16"
/gene_synonym="DKFZp666H147"
/db_xref="GeneID:64089"
/db_xref="HGNC:HGNC:14980"
CDS 170..1204
/gene="SNX16"
/gene_synonym="DKFZp666H147"
/codon_start=1
/product="sorting nexin 16"
/protein_id="AAH33630.1"
/db_xref="GeneID:64089"
/db_xref="HGNC:HGNC:14980"
/translation="MATPYVPVPMPIGNSASSFTTNRNQRSSSFGSVSTSSNSSKGQL
EDSNMGNFKQTSVPDQMDNTSSVCSSPLIRTKFTGTASSIEYSTRPRDTEEQNPETVN
WEDRPSTPTILGYEVMEERAKFTVYKILVKKTPEESWVVFRRYTDFSRLNDKLKEMFP
GFRLALPPKRWFKDNYNADFLEDRQLGLQAFLQNLVAHKDIANCLAVREFLCLDDPPG
PFDSLEESRAFCETLEETNYRLQKELLEKQKEMESLKKLLSEKQLHIDTLENRIRTLS
LEPEESLDVSETEGEQILKVESSALEVDQDVLDEESRADNKPCLSFSEPENAVSEIEV
AEVAYDAEED"
BASE COUNT 681 a 286 c 331 g 514 t
ORIGIN
1 gctgcggtta aggagagtcc ggtttaaccg tcaccgggaa gcgcgctcgt tcgggatcgc
61 cgagtgggct gagatagtga attcctaaga agaaaataat ggattgcata ttagttgttc
121 tctaagtgga ctcaacagtg tgcaagcttg ttggaaaagc caaaagaaga tggcaactcc
181 ttatgtccca gttcctatgc ccataggaaa ctctgcttcc agttttacaa caaacagaaa
241 tcaaagaagt tcttcttttg gcagtgtctc aacaagctca aattcttcta agggccagtt
301 agaagactca aatatgggta attttaaaca gacaagtgtt cctgatcaaa tggataatac
361 ttcatctgtc tgtagcagtc ccctcattag gactaaattt acaggtacag cttcttccat
421 tgagtattct actagaccaa gagacactga agaacaaaat ccggaaacag tgaattggga
481 agatagacca tctacaccta ctatactggg ttatgaagtg atggaagaaa gagctaaatt
541 tactgtatat aaaatactag taaagaaaac cccagaagaa agctgggtag ttttcagaag
601 atacactgac ttctctaggc ttaatgacaa attaaaagag atgtttccag gttttcgact
661 agcacttcct ccaaaacgct ggtttaaaga taattacaat gctgactttt tagaagacag
721 acaattagga ttacaagcgt ttcttcaaaa tttagtagct cacaaggaca ttgctaactg
781 ccttgcagtg agagaatttc tttgtttgga tgatccaccg ggtccatttg atagcctaga
841 agaaagcagg gcattctgtg aaactttaga agagacaaac taccgcttac agaaagaact
901 acttgaaaaa caaaaggaga tggaatcact aaagaaactg ctcagtgaga agcaacttca
961 tatagacact ttagagaaca gaatcagaac attgtcttta gaacctgaag aatcactgga
1021 tgtgtcagaa acagaaggtg aacagatcct aaaggtggag tcctctgcac ttgaggttga
1081 tcaagatgtc ctggatgaag aatctagagc tgataataaa ccatgcttaa gttttagtga
1141 acctgaaaat gctgtatcag agatagaagt agcagaagtg gcatatgatg ctgaagaaga
1201 ctaatgtatc acaagcagtt ccctccattt agactattca aaaatttaga agagtggcaa
1261 atactatttt aaaagaagaa ccaagaactg taaaacatat agaaaagagc aagaatgcac
1321 atgtataaag tttacataaa gaagtttttt taagttattg agataggaaa tatattcact
1381 gctgctttta attgtatttt atccaattac atttaataca ctaaaaaaaa tcttgttgga
1441 attctgttat caaggcccac attcttaaat actgtgcata aattattatg gtgttttgcc
1501 tatatattgc tccaaactac tgtgtatata tgtatgtgtg ttaaatcacc aattatatta
1561 atcaaatgga aattaattgc atgttactat ctgggtgata tattcttctt tatatctctg
1621 acatgacata ttttcattaa tagtttaaat cagtgaccat cataataaag ataaaattta
1681 gttgagtttt taatgtttac atgtttacat ctctaaataa aatttgctta tttgaaatgt
1741 taaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1801 aaaaaaaaaa aa
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