LOCUS BC033209 2741 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens chromosome 15 open reading frame 42, mRNA (cDNA clone
IMAGE:4906047), partial cds.
ACCESSION BC033209
VERSION BC033209.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2741)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2741)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: i Column: 9.
FEATURES Location/Qualifiers
source 1..2741
/db_xref="H-InvDB:HIT000041841"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4906047"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2741
/gene="C15orf42"
/db_xref="GeneID:90381"
/db_xref="HGNC:HGNC:28704"
CDS <1..1775
/gene="C15orf42"
/codon_start=3
/product="C15orf42 protein"
/protein_id="AAH33209.2"
/db_xref="GeneID:90381"
/db_xref="HGNC:HGNC:28704"
/translation="KKSPFRKSKIECPSPGELDQKEPQMSPSVAASLSCPVPSTPPEL
SQRATLDTVPPPPPSKVGKRCRKTSDPRRSIVECQPDASATPGVGTADSPAAPTDSRD
DQKGLSLSPQSPPERRGYPGPGLRSDWHASSPLLITSDTEHVTLLSEAEHHGIGDLKS
NVLSVEEGEGLRTADAEKSSLSHPGIPPSPPSCGPGSPLMPSCDVHCTTDGRQCQASA
QLDNLPASAWHSTDSASPQTYEVELEMQASGLPKLRIKKIDPSSSLEAEPLSKEESSL
GEESFLPALSMPRASRSLSKPEPTYVSPPCPRLSHSTPGKSRGQTYICQACTPTHGPS
STPSPFQTDGVPWTPSPKHSGKTTPDIIKDWPRRKRAVGCGAGSSSGRGEVGADLPGS
LSLLESEGKDHGLELSIHRTPILEDFELEGVCQLPDQSPPRNSMPKAEEASSWGQFGL
SSRKRVLLAKEEADRGAKRICDLREDSEVSKSKEGSPSWSAWQLPSTGDEEVFVSGST
PPPSCAVRSCLSASALQALTQSPLLFQGKTPSSQSKDPRDEDVDVLPSTVEDSPFSRA
FSRRRPISRTYTRKKLMGTWLEDL"
BASE COUNT 661 a 785 c 692 g 603 t
ORIGIN
1 ccaagaagag tccatttagg aaatctaaaa tagagtgtcc ttccccagga gaactggatc
61 agaaagagcc ccagatgtca cccagcgtag ctgcatctct ctcctgccct gttccctcaa
121 ctccccctga actctcacag agagctacat tggacaccgt ccctcctcca cccccttcta
181 aagttgggaa acggtgtaga aagacctctg atcccagaag gagcatcgtg gagtgtcagc
241 ctgatgcctc cgctactcct ggggttggca cagctgacag cccagctgcc cccacagact
301 ctagagatga ccagaaggga ctgagcctct ctcctcagtc tcctcctgaa agacggggct
361 acccaggccc tggtctcagg agtgattggc atgcatcctc tcctctgctc attacaagtg
421 acacagagca tgtcactctc ctcagtgaag ccgaacacca tggcattggt gacttgaaaa
481 gtaacgtctt atcagtggaa gagggtgagg ggctaaggac agcagatgct gagaagtctt
541 ctctgtctca ccctgggatt cccccatctc ctccttcctg tgggcctggc tctcctctga
601 tgccttcctg tgacgtgcac tgtaccacag atgggagaca gtgccaggct tcggcacaac
661 tagacaacct gccagcatca gcttggcatt ccacagactc tgccagccca cagacctatg
721 aggttgagct ggagatgcaa gcttctggcc ttcccaaact tcgaattaag aagatagacc
781 ccagctcttc attagaggct gagcccctca gcaaggagga gagctctctg ggagaagaga
841 gcttcctccc tgctctcagc atgcccaggg ccagcaggtc cttaagcaaa cctgaaccca
901 cctatgtgtc acccccctgc ccccgcctct cccacagcac acctggcaag agcagggggc
961 aaacctacat ctgccaggcc tgtaccccca cccacggccc ttctagtacc ccctctccat
1021 ttcaaacaga tggggttcct tggacaccat cccccaagca cagtgggaag acaactccag
1081 acataattaa agactggccc aggaggaaga gggcggtggg ctgtggcgcc ggctcctctt
1141 ccgggagggg cgaggtcggt gcagaccttc ctgggagcct gtcactgctt gagtcagagg
1201 gcaaggacca cggccttgaa ctcagcatcc acaggacgcc catcttggag gattttgagc
1261 tcgagggagt gtgccagctc ccagaccagt cgcctcccag gaacagcatg cctaaggccg
1321 aggaagcctc ttcctgggga cagtttgggt tgagttccag gaagagagtc ctgttggcca
1381 aggaagaagc tgaccgtgga gccaaaagga tctgtgacct gagagaagat tcagaagtta
1441 gtaagagtaa agaggggtct ccaagttgga gtgcatggca gctaccctcc acgggagacg
1501 aagaggtgtt tgtttccggc tccaccccac ctcccagctg tgccgtgcgg agctgcctct
1561 ctgccagtgc cctccaggct ctgacccagt ctccgctgct gttccagggg aaaacacctt
1621 cctctcagag caaagacccc agagatgagg atgtggatgt tcttccctcc actgtagaag
1681 actctccttt cagtcgcgct ttctccagga ggcgccccat cagcagaact tatacacgga
1741 agaagctcat gggaacctgg ctggaggact tatagccaca aacattactg agcccaaaag
1801 atcaaggagt cagccaggac cctgtggaca taaagaagtt ggatgcctgg tcccaagcct
1861 cttttgccat ggtcagtgtt cagattgcca ttagaatgcc ttagggtttt ctaattcccc
1921 ttatggatcc aatccatctc ctggccctgc cccttgttgg ggaagttgca ggaggagagg
1981 tggatggcaa tgtgattggt gctataactc aggcagcctg ggagtcagga acccagacaa
2041 ggaatcccat tccagcctca ccccaaccat gaccttggca agtcaggggg ccactctgcc
2101 tcatttatgc aaatggagaa aggcgccctc cctggggtcc cttgagctgc tgtaaggctg
2161 ggctgctgcg acacaggcag cgctttgtaa actgtgaagc catatacgtg aaactgaaga
2221 gtgcattggg cagtggaagc tattttttgc cttccctgtg taacagtaaa atcatctcta
2281 gtgactgagc actcagtaca tttttgttta atgttgggcc tgaggttaac tgtgaccatg
2341 gtccagcttg agtggcttct ggagcagcca cattttcaag gactgtccaa gagccagcca
2401 gttcagggct caggcctcac ccattgccca ctcctgggga gaccatcacc tggctcatcg
2461 tttccaccaa gagtgcccca caggagtgcc ccacagaccc gctggaccag cctgctgcgg
2521 gtcctggcca ggggtctggc taacggtgag ggctgactct gaactgtctc tcagtctcca
2581 gaaagtgttc aagcctgttg tgttcccaaa tctgattcct cctattgtct tgtaaatcaa
2641 actctaagtg aaaacttccc atttgtccct tcaaagattt ttttttatta aatggttttt
2701 taagattaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//