LOCUS BC033080 2842 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tuftelin interacting protein 11, mRNA (cDNA clone
MGC:45639 IMAGE:3544615), complete cds.
ACCESSION BC033080
VERSION BC033080.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2842)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2842)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 43 Row: b Column: 23.
FEATURES Location/Qualifiers
source 1..2842
/db_xref="H-InvDB:HIT000041788"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45639 IMAGE:3544615"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2842
/gene="TFIP11"
/gene_synonym="bK445C9.6"
/gene_synonym="TIP39"
/db_xref="GeneID:24144"
/db_xref="HGNC:HGNC:17165"
CDS 229..2742
/gene="TFIP11"
/gene_synonym="bK445C9.6"
/gene_synonym="TIP39"
/codon_start=1
/product="tuftelin interacting protein 11"
/protein_id="AAH33080.1"
/db_xref="GeneID:24144"
/db_xref="HGNC:HGNC:17165"
/translation="MSLSHLYRDGEGRIDDDDDERENFEITDWDLQNEFNPNRQRHWQ
TKEEATYGVWAERDSDDERPSFGGKRARDYSAPVNFISAGLKKGAAEEAESEDSDDEE
KPVKQDDFPKDFGPRKLKTGGNFKPSQKGFAGGTKSFMDFGSWERHTKGIGQKLLQKM
GYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSMQDFPVVDSEEEAEEEF
QKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRISKKLTAPQKELSQVKVIDMTGREQ
KVYYSYSQISHKHNVPDDGLPLQSQQLPQSGKEAKAPGFALPELEHNLQLLIDLTEQE
IIQNDRQLQYERDMVVNLFHELEKMTEVLDHEERVISNLSKVLEMVEECERRMQPDCS
NPLTLDECARIFETLQDKYYEEYRMSDRVDLAVAIVYPLMKEYFKEWDPLKDCTYGTE
IISKWKSLLENDQLLSHGGQDLSADAFHRLIWEVWMPFVRNIVTQWQPRNCDPMVDFL
DSWVHIIPVWILDNILDQLIFPKLQKEVENWNPLTDTVPIHSWIHPWLPLMQARLEPL
YSPIRSKLSSALQKWHPSDSSAKLILQPWKDVFTPGSWEAFMVKNIVPKLGMCLGELV
INPHQQHMDAFYWVIDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKW
YLGWKSMFSDQVLAHPSVKDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERR
KDFQYEAMQERREAENMAQRGIGVAASSVPMNFKDLIETKAEEHNIVFMPVIGKRHEG
KQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK"
BASE COUNT 765 a 716 c 794 g 567 t
ORIGIN
1 ggcgtcttct cgcgcggatg gtgaagctga atttggtacg ctggaccctc ggacagacag
61 caagagagag acaagcccga ggcctgactt ctagcactcc tgagtttgag ccctatgagc
121 agtggaacct agggaccacc aaggatccag atataattct ttcctcagta atagaaaaaa
181 gaatctggga tctaagaaga tacctactca ttttctaagt gactggccat gtcattgtcc
241 cacttatacc gggatgggga aggccgcatt gatgatgatg atgacgagcg ggagaacttt
301 gagatcactg actgggatct ccagaatgag ttcaacccca accgacagcg ccactggcag
361 accaaggaag aagccaccta cggggtgtgg gcagagcgag actcggatga tgagaggccc
421 agctttggag gcaaacgggc ccgtgactac tctgcgccag tcaacttcat cagcgcaggg
481 ctcaagaaag gggcagcgga ggaggcagag tcggaagatt ctgatgacga agagaaacct
541 gttaagcagg acgactttcc taaggatttt ggaccaagga agctaaaaac gggtggcaat
601 tttaagccca gccagaaagg ttttgcagga ggaaccaaat ctttcatgga cttcggcagc
661 tgggaaagac acacaaaagg aattggacag aagcttcttc agaagatggg ctacgtccct
721 ggacggggcc tcgggaagaa tgcacaaggt atcattaacc caattgaagc caagcagaga
781 aagggaaaag gtgctgtggg ggcttatgga tccgagcgca ccactcagtc catgcaagac
841 ttccctgtgg ttgactcaga ggaagaagct gaagaggagt ttcagaagga gctgagccag
901 tggaggaaag acccaagtgg aagcaagaag aagcccaaat actcttacaa gaccgtggaa
961 gagttgaagg ccaagggcag gattagcaag aagctcactg ctccccagaa ggaactttct
1021 caagtcaagg tcatagacat gacaggccgg gagcagaagg tctactacag ctacagtcag
1081 atcagccaca agcacaacgt tcccgatgat gggctgccgc tacagtccca acagctgcca
1141 cagtctggca aagaggccaa ggcccccggc ttcgcgctgc ccgagctgga gcacaacctg
1201 cagctgctca tcgacctcac ggagcaggag atcatccaga atgaccggca gctacagtat
1261 gagcgggaca tggtggtcaa cctcttccat gagctggaga agatgaccga ggtcctggac
1321 cacgaggagc gggtcatctc gaacctcagc aaggtcctgg agatggtgga ggagtgcgag
1381 cggcggatgc agcccgactg cagcaacccc ctcaccctgg acgagtgtgc ccgcatcttc
1441 gaaaccctgc aggacaagta ctatgaggag tacaggatgt ccgaccgtgt ggaccttgct
1501 gtggccatcg tctatccact catgaaggag tacttcaagg agtgggatcc cctcaaagac
1561 tgcacttatg gcaccgagat catctctaag tggaaaagcc tcctagagaa tgaccagctc
1621 ttgtcccatg gcggacagga cctctcagca gatgcctttc acaggttgat atgggaagtc
1681 tggatgcctt ttgttcgaaa tattgtcacc cagtggcagc caaggaactg tgacccgatg
1741 gtggactttt tggatagttg ggtgcacatt attcctgtgt ggatcttaga taacatactg
1801 gaccaactca tcttccccaa gctgcaaaag gaggtggaaa actggaaccc gctcacagac
1861 actgttccca tccactcttg gatccaccca tggctgcccc ttatgcaggc acggctggag
1921 ccactctatt cccccatccg tagtaagctg tccagcgccc tgcagaagtg gcaccccagc
1981 gactcctctg ccaagctcat cctccagccc tggaaggatg tcttcactcc tggctcctgg
2041 gaagcattca tggtcaaaaa catagtgccc aagctgggga tgtgtcttgg tgagctagtc
2101 attaaccccc accagcagca catggatgca ttctattggg tgattgactg ggaagggatg
2161 atctctgtct ctagcctggt gggacttctt gaaaagcact tcttccccaa gtggcttcag
2221 gtgctgtgct cttggctcag taacagccca aattatgagg agatcaccaa gtggtacctg
2281 ggttggaagt cgatgttctc agaccaagtg ctggcacatc catctgtcaa ggacaaattt
2341 aatgaggcac ttgatatcat gaaccgggcg gtgtcctcca acgttggtgc ctacatgcag
2401 ccaggagcac gggagaacat tgcctatctc acccacacgg agcggaggaa ggacttccag
2461 tacgaggcca tgcaggagag gcgggaggct gagaacatgg ctcagagggg cattggcgtg
2521 gccgctagct ctgtgcccat gaactttaag gacctcattg agaccaaggc tgaggagcac
2581 aacattgtct tcatgcccgt cattgggaag cgacacgaag ggaagcagct ctacaccttt
2641 ggccgcattg tgatctacat cgaccgggga gtggtctttg tccagggcga gaagacgtgg
2701 gtgcccacct cactgcagag cctgatcgac atggccaagt gaactgtggc aggtccagaa
2761 ccagtcagag acttgcccct aagagggatg tactgtaaat aaacagtatt tttagatcac
2821 cttaaaaaaa aaaaaaaaaa aa
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