LOCUS BC033024 1807 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens ATG4 autophagy related 4 homolog C (S. cerevisiae),
mRNA (cDNA clone MGC:32915 IMAGE:4838543), complete cds.
ACCESSION BC033024
VERSION BC033024.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1807)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1807)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (21-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 47 Row: e Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30410843.
FEATURES Location/Qualifiers
source 1..1807
/db_xref="H-InvDB:HIT000041764"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:32915 IMAGE:4838543"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1807
/gene="ATG4C"
/gene_synonym="APG4-C"
/gene_synonym="AUTL3"
/gene_synonym="FLJ14867"
/db_xref="GeneID:84938"
/db_xref="HGNC:HGNC:16040"
CDS 196..1572
/gene="ATG4C"
/gene_synonym="APG4-C"
/gene_synonym="AUTL3"
/gene_synonym="FLJ14867"
/codon_start=1
/product="ATG4 autophagy related 4 homolog C (S.
cerevisiae)"
/protein_id="AAH33024.1"
/db_xref="GeneID:84938"
/db_xref="HGNC:HGNC:16040"
/translation="MEATGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLL
GKCYHFKYEDEDKTLPAESGCTIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEGSA
LTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALNIENSDSESWTSHTVKKFTAS
FEASLSGEREFKTPTISLKETIGKYSDDHEMRNEVYHRKIISWFGDSPLALFGLHQLI
EYGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGITIYVAQDCTVYNSDVIDKQS
ASMTSDNADDKAVIILVPVRLGGERTNTDYLEFVKGILSLEYCVGIIGGKPKQSYYFA
GFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQ
DFKRASEEITKMLKFSSKEKYPLFTFVNGHSRDYDFTSTTTNEEDLFSEDEKKQLKRF
STEEFVLL"
BASE COUNT 598 a 289 c 370 g 550 t
ORIGIN
1 agcgggctga ggtcggaacg tctgcgtgtg tgcgggctgg ttttgtggcg gctgctgcta
61 gagctggagc atttgccggg ttggtggctc ctgcacattt ttacagttct ccagtccttc
121 tctttcgtca gtataaaaga ttaaactcta cagaagaatg caatcaagtg atggcttttc
181 ctttagaatt tgaatatgga ggctacagga acagatgaag ttgacaagct aaaaaccaaa
241 tttatatctg cttggaacaa catgaaatat agttgggtgt tgaaaacaaa gacgtatttt
301 agtagaaatt ctcctgtatt attgcttgga aaatgttacc attttaaata tgaagatgaa
361 gataaaacgt tacctgcaga gtcgggatgt acaatagagg atcacgtaat tgcaggaaat
421 gtagaagaat ttcgtaaaga tttcatttct agaatatggc tgacctacag ggaagaattc
481 cctcaaatag aaggctcagc tttgacaaca gactgtgggt ggggctgcac attgagaact
541 ggccagatgc tcttggctca aggactcata ctacactttc ttggtagagc ttggacctgg
601 cctgatgctt tgaatattga aaattcagac tctgaatcat ggacttccca cactgtcaaa
661 aaatttactg catcatttga agcatcactt tcaggggaaa gagaattcaa aaccccaaca
721 atttctctga aggaaacaat tgggaaatat tctgatgatc atgaaatgcg aaatgaagtt
781 tatcatagga aaatcatctc ttggtttggt gattccccct tggctctttt tggcttacat
841 caactaatag aatatggaaa gaagtctggg aaaaaagcag gagattggta tggaccagct
901 gtggttgctc acattttaag aaaagcagtt gaagaagcaa ggcatcctga tttacaagga
961 ataactattt atgttgcaca agattgtaca gtttacaatt ctgatgtaat tgataaacag
1021 agtgcttcca tgacttctga taatgcagat gacaaagctg ttattattct agttcctgtt
1081 agacttggtg gagaaagaac caacaccgac tacttagaat ttgtgaaggg tattttaagc
1141 ctggaatatt gtgtgggtat tattggtggc aaacctaaac agtcatatta ctttgctgga
1201 tttcaagatg acagtttgat ttacatggat cctcattact gccaatcttt tgtagatgtc
1261 agcataaagg atttccctct tgagacattc cactgccctt ctcccaaaaa gatgtctttt
1321 cgaaaaatgg atcccagctg tacaatagga ttttactgtc gaaatgttca ggacttcaaa
1381 cgagcttctg aagaaatcac caagatgctg aaattttctt ctaaggagaa atatccctta
1441 tttacttttg taaatggtca ttccagagac tatgatttta catctactac aaccaatgaa
1501 gaagaccttt tttcagagga tgaaaagaaa caattaaaaa gatttagcac ggaagagttt
1561 gtcttgcttt aaagattagc acatttgtgc ttgataagaa gaattccatt gaaaggggaa
1621 aaatgaagag aaacaagtat atctgaaatg tttattttca caaatatctt aattttatat
1681 gttctttaaa aaagaacatt tgaaaatata acagttaaag atatttttct aaaagagaaa
1741 tgatttaatg aatcttgctt tctaataaat aaattgagtg attctggttg caaaaaaaaa
1801 aaaaaaa
//