LOCUS BC032940 3336 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens lysosomal-associated membrane protein 3, mRNA (cDNA
clone MGC:26448 IMAGE:4829125), complete cds.
ACCESSION BC032940
VERSION BC032940.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3336)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3336)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC032940.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: f Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38455384.
FEATURES Location/Qualifiers
source 1..3336
/db_xref="H-InvDB:HIT000041740"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:26448 IMAGE:4829125"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3336
/gene="LAMP3"
/gene_synonym="CD208"
/gene_synonym="DC-LAMP"
/gene_synonym="DCLAMP"
/gene_synonym="LAMP"
/gene_synonym="TSC403"
/db_xref="GeneID:27074"
/db_xref="HGNC:HGNC:14582"
/db_xref="MIM:605883"
CDS 181..1431
/gene="LAMP3"
/gene_synonym="CD208"
/gene_synonym="DC-LAMP"
/gene_synonym="DCLAMP"
/gene_synonym="LAMP"
/gene_synonym="TSC403"
/codon_start=1
/product="lysosomal-associated membrane protein 3"
/protein_id="AAH32940.1"
/db_xref="GeneID:27074"
/db_xref="HGNC:HGNC:14582"
/db_xref="MIM:605883"
/translation="MPRQLSAAAALFASLAVILHDGSQMRAKAFPGTRDYSQPTAAAT
VQDIKKPVQQPAKQAPHQTLAARFMDGHITFQTAATVKIPTTTPATTKNTATTSPITY
TLVTTQATPNNSHTAPPVTEVTVGPSLAPYSLPPTITPPAHTTGTSSSTVSHTTGNTT
QPSNQTTLPATLSIALHKSTTGQKPVQPTHAPGTTAAAHNTTRTAAPASTVPGPTLAP
QPSSVKTGIYQVLNGSRLCIKAEMGIQLIVQDKESVFSPRRYFNIDPNATQASGNCGT
RKSNLLLNFQGGFVNLTFTKDEESYYISEVGAYLTVSDPETVYQGIKHAVVMFQTAVG
HSFKCVSEQSLQLSAHLQVKTTDVQLQAFDFEDDHFGNVDECSSDYTIVLPVIGAIVV
GLCLMGMGVYKIRLRCQSSGYQRI"
BASE COUNT 964 a 801 c 660 g 911 t
ORIGIN
1 gtgggggtag gagggggccg gcggagtttc cctccccgcc cagcggccct gggcgggctt
61 ttcggctgct tctcataagc aggtggtttc gtttctccgg cacaggtagg tttctctggc
121 accgattcgg ggcctgcccg gacttcgccg cacgctgcag aacctcgccc agcgcccacc
181 atgccccggc agctcagcgc ggcggccgcg ctcttcgcgt ccctggccgt aattttgcac
241 gatggcagtc aaatgagagc aaaagcattt ccaggaacca gagattattc tcaacctact
301 gcagcagcaa cagtacagga cataaaaaaa cctgtccagc aaccagctaa gcaagcacct
361 caccaaactt tagcagcaag attcatggat ggtcatatca cctttcaaac agcggccaca
421 gtaaaaattc caacaactac cccagcaact acaaaaaaca ctgcaaccac cagcccaatt
481 acctacaccc tggtcacaac ccaggccaca cccaacaact cacacacagc tcctccagtt
541 actgaagtta cagtcggccc tagcttagcc ccttattcac tgccacccac catcacccca
601 ccagctcata caactggaac cagttcatca accgtcagcc acacaactgg gaacaccact
661 caacccagta accagaccac ccttccagca actttatcga tagcactgca caaaagcaca
721 accggtcaga agcctgttca acccacccat gccccaggaa caacggcagc tgcccacaat
781 accacccgca cagctgcacc tgcctccacg gttcctgggc ccacccttgc acctcagcca
841 tcgtcagtca agactggaat ttatcaggtt ctaaacggaa gcagactctg tataaaagca
901 gagatgggga tacagctgat tgttcaagac aaggagtcgg ttttttcacc tcggagatac
961 ttcaacatcg accccaacgc aacgcaagcc tctgggaact gtggcacccg aaaatccaac
1021 cttctgttga attttcaggg cggatttgtg aatctcacat ttaccaagga tgaagaatca
1081 tattatatca gtgaagtggg agcctatttg accgtctcag atccagagac agtttaccaa
1141 ggaatcaaac atgcggtggt gatgttccag acagcagtcg ggcattcctt caagtgcgtg
1201 agtgaacaga gcctccagtt gtcagcccac ctgcaggtga aaacaaccga tgtccaactt
1261 caagcctttg attttgaaga tgaccacttt ggaaatgtgg atgagtgctc gtctgactac
1321 acaattgtgc ttcctgtgat tggggccatc gtggttggtc tctgccttat gggtatgggt
1381 gtctataaaa tccgcctaag gtgtcaatca tctggatacc agagaatcta attgttgccc
1441 ggggggaatg aaaataatgg aatttagaga actctttcat cccttccagg atggatgttg
1501 ggaaattccc tcagagtgtg ggtccttcaa acaatgtaaa ccaccatctt ctattcaaat
1561 gaagtgagtc atgtgtgatt taagttcagg cagcacatca atttctaaat actttttgtt
1621 tattttatga aagatatagt gagctgttta ttttctagtt tcctttagaa tattttagcc
1681 actcaaagtc aacatttgag atatgttgaa ttaacataat atatgtaaag tagaataagc
1741 cttcaaatta taaaccaagg gtcaattgta actaatacta ctgtgtgtgc attgaagatt
1801 ttattttacc cttgatctta acaaagcctt tgctttgtta tcaaatggac tttcagtgct
1861 tttactatct gtgttttatg gtttcatgta acatacatat tcctggtgta gcacttaact
1921 ccttttccac tttaaatttg tttttgtttt ttgagacgga gtttcactct tgtcacccag
1981 gctggagtac agtggcacga tctcggctta tggcaacctc cgcctcccgg gttcaagtga
2041 ttctcgtgct tcagcttccc gagtagctgg gattacaggc acacactacc acgcctggct
2101 aatttttgta tttttattat agacggggtt tcaccatgtt ggccagactg gtcttgaact
2161 cttgacctca ggtgatccac ccacctcagc ctcccaaagt gctgggatta caggcatgag
2221 ccattgcgcc cggccttaaa tgtttttttt taatcatcaa aaagaacaac atatctcagg
2281 ttgtctaagt gtttttatgt aaaaccaaca aaaagaacaa atcagcttat attttttatc
2341 ttgatgactc ctgctccaga atcgctagac taagaattag gtgtctacag atggtagaac
2401 taaacaataa gcaagagaca ataataatgg cccttaatta ttaacaaagt gccagagtct
2461 aggctaagca ctttatctat atctcatttc attctcacaa cttataggtg aatgagtaaa
2521 ctgagactta agggaactga atcacttaaa tgtcacctgg ctaactgatg gcagagccag
2581 agcttgaatt catgttggtc tgacatcaag gtctttggtc ttctccctac accaagttac
2641 ctacaagaac aatgacacca cactctgcct gaaggctcac acctcatacc agcatacgct
2701 caccttacag ggaaatgggt ttatccagga tcatgagaca ttagggtaga tgaaaggaga
2761 gctttgcaga taacaaaata gcctatcctt aataaatcct ccactctctg gagggagact
2821 gaggggcttt gtaaaacatt agtcagttgc tcatttttat gggattgctt agctgggctg
2881 taaagatgaa ggcatcaaat aaactcaaag tatttttaaa tttttttgat aatagagaaa
2941 cttcgctaac caactgttct ttcttgagtg tatagcccca tcttgtggta acttgctgct
3001 tctgcacttc atatccatat ttcctattgt tcactttatt ctgtagagca gcctgccaag
3061 aattttattt ctgctgtttt ttttgctgct aaagaaagga actaagtcag gatgttaaca
3121 gaaaagtcca cataacccta gaattcttag tcaaggaata attcaagtca gcctagagac
3181 catgttgact ttcctcatgt gtttccttat gactcagtaa gttggcaagg tcctgacttt
3241 agtcttaata aaacattgaa ttgtagtaaa ggtttttgta ataaaaactt actttggaaa
3301 aaaaaaaaaa aaaaaaaaat aaaaaaaaaa aaaaaa
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