LOCUS BC032919 2311 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens 2-oxoglutarate and iron-dependent oxygenase domain
containing 1, mRNA (cDNA clone MGC:39165 IMAGE:5427174), complete
cds.
ACCESSION BC032919
VERSION BC032919.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2311)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2311)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 42 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42476029.
FEATURES Location/Qualifiers
source 1..2311
/db_xref="H-InvDB:HIT000041739"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:39165 IMAGE:5427174"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..2311
/gene="OGFOD1"
/gene_synonym="FLJ10826"
/gene_synonym="KIAA1612"
/db_xref="GeneID:55239"
/db_xref="HGNC:HGNC:25585"
CDS 73..1701
/gene="OGFOD1"
/gene_synonym="FLJ10826"
/gene_synonym="KIAA1612"
/codon_start=1
/product="2-oxoglutarate and iron-dependent oxygenase
domain containing 1"
/protein_id="AAH32919.1"
/db_xref="GeneID:55239"
/db_xref="HGNC:HGNC:25585"
/translation="MNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWS
RRTPFSHEVIVMDMDPFLHCVIPNFIQSQDFLEGLQKELMNLDFHEKYNDLYKFQQSD
DLKKRREPHISTLRKILFEDFRSWLSDISKIDLESTIDMSCAKYEFTDALLCHDDELE
GRRIAFILYLVPPWDRSMGGTLDLYSIDEHFQPKQIVKSLIPSWNKLVFFEVSPVSFH
QVSEVLSEEKSRLSISGWFHGPSLTRPPNYFEPPIPRSPHIPQDHEILYDWINPTYLD
MDYQVQIQEEFEESSEILLKEFLKPEKFTKVCEALEHGHVEWSSRGPPNKRFYEKAEE
SKLPEILKECMKLFRSEALFLLLSNFTGLKLHFLAPSEEDEMNDKKEAETTDITEEGT
SHSPPEPENNQMAISNNSQQSNEQTDPEPEENETKKESSVPMCQGELRHWKTGHYTLI
HDHSKAEFALDLILYCGCEGWEPEYGGFTSYIAKGEDEELLTVNPESNSLALVYRDRE
TLKFVKHINHRSLEQKKTFPNRTGFWDFSFIYYE"
BASE COUNT 674 a 495 c 513 g 629 t
ORIGIN
1 gccgggagtt gcagtaccct caggaaggta gcgtcttgat ctgcgtggcg tggttctgtg
61 ccttgggaag agatgaatgg gaagcggcca gcggagcccg gcccagcccg ggtgggaaaa
121 aagggaaaga aggaggtgat ggcggagttt tcggacgctg ttacggaaga aaccttgaaa
181 aagcaggtgg ctgaggcctg gagccgcagg acgccgttca gtcacgaagt cattgtcatg
241 gacatggacc cttttcttca ctgtgtgatc ccaaacttca tccaaagcca agacttctta
301 gaagggcttc agaaggaact gatgaacttg gacttccatg agaagtataa tgatttatat
361 aagttccagc agtctgatga tttgaagaag agaagagagc ctcacatctc cactttaagg
421 aaaattctgt ttgaagattt ccggtcctgg ctttctgata tttctaaaat tgacctggaa
481 tcaaccattg acatgtcctg tgctaaatat gaattcactg atgccctgct gtgccatgat
541 gatgagctgg aagggcgccg gattgccttc atcctgtacc tggttcctcc ctgggacagg
601 agcatgggtg gtaccctgga cctgtacagc attgatgaac actttcagcc gaagcagatt
661 gtcaagtctc ttatcccttc gtggaacaaa ctggttttct ttgaagtatc tcctgtgtcc
721 tttcaccagg tgtctgaagt gctgtctgaa gaaaagtcac gtttgtctat aagtggctgg
781 tttcatggtc catcattgac tcggcctccc aactactttg aaccccccat acctcggagc
841 cctcacatcc cacaagatca tgagattttg tatgattgga tcaaccctac ttatctggac
901 atggattacc aagttcaaat tcaagaagag tttgaagaaa gttctgaaat tctcctgaag
961 gagtttctta agcctgagaa attcacgaaa gtctgtgagg ccttggagca tggacatgtg
1021 gaatggagca gccgaggtcc ccctaacaaa aggttttatg agaaagctga ggagagtaag
1081 cttcctgaga tattgaagga gtgcatgaag ttatttcgct ctgaggcact attcttgctg
1141 ctctccaact tcacaggcct gaagcttcat ttcttggccc cttcggaaga agatgagatg
1201 aatgataaaa aagaggcaga aaccactgat atcactgaag aagggactag ccatagtcct
1261 cctgagccag agaataatca gatggccatc agcaacaaca gccaacagag caatgagcag
1321 acagacccag agccagagga aaatgaaaca aagaaagaat caagtgttcc catgtgccaa
1381 ggggaactga ggcattggaa gaccggtcac tacactttaa ttcatgacca tagcaaggct
1441 gaatttgccc tagacttaat tctgtactgt ggctgtgaag gctgggagcc agaatatggc
1501 ggttttactt cttacattgc caaaggtgaa gatgaagagc tgctaacagt gaatccagaa
1561 agcaattctt tggcattggt ctacagagac agagagactc tgaaatttgt caagcatatt
1621 aaccaccgaa gcctggaaca aaagaaaacc ttcccaaaca gaacaggttt ctgggacttt
1681 tcattcatct attatgaatg acagcactgg gcaaagctga acaaaaatgt gacccttcgt
1741 aattactggg aagtctgaaa gagctaagca tggagtcaag gagaactaca tggtagcttg
1801 cctgacagtg ttcttaaaac tggttgtctt ttactaggac tcataatgat tgtcctcaac
1861 cgagaccttg agcttgcagc taagtactta tctcttgatt aaaaaaaaaa agttggcttt
1921 ttttttttta acatttagtc ctttttccat attggcttct tcagtgaatt tttaagttca
1981 atttgttttt attgaggtaa aatatttata acataaaact gaccagctta cccattttta
2041 aatatgcaat tcagtggatt aagtacattc tcattgttgt ccagccatca ccatcatcca
2101 tctccagaag ttttccatct tcccaaattc tgtgcccatt gaacaataac tccccacctc
2161 cccttcccct agcaacagcc ataccttttg tctctatcat caacttcact actcatattt
2221 ctcatgtaag tggaatcata cagtatttgt ccttttgtga ctggtttcac ttagcataaa
2281 gtctttaaga tgcaaaaaaa aaaaaaaaaa a
//