LOCUS BC032836 1598 bp mRNA linear HUM 28-JUL-2006
DEFINITION Homo sapiens LY6/PLAUR domain containing 6, mRNA (cDNA clone
IMAGE:4827077), complete cds.
ACCESSION BC032836
VERSION BC032836.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1598)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1598)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (07-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 34 Row: a Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50355992
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1598
/db_xref="H-InvDB:HIT000092831"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4827077"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1598
/gene="LYPD6"
/gene_synonym="MGC52057"
/db_xref="GeneID:130574"
/db_xref="HGNC:HGNC:28751"
CDS 500..730
/gene="LYPD6"
/gene_synonym="MGC52057"
/codon_start=1
/product="LYPD6 protein"
/protein_id="AAH32836.1"
/db_xref="GeneID:130574"
/db_xref="HGNC:HGNC:28751"
/translation="MEPGPALAWLLLLSLLADCLKAAQSRDFTVKDIIYLHPSTTPYP
GGFKCFTCEKAADNYECNRWAPDIYCPRGTMI"
BASE COUNT 493 a 372 c 357 g 376 t
ORIGIN
1 agcgtgtggg catgaaagac caaccactct gtaaatgcac ataaagaaca acctccttga
61 gcaatctcaa gcaagagaaa gaagaggctt ccgagctcca gcaaaacaat gggaaaaaac
121 atacccttat cttttccttc tcattttcaa aggtaccgtg aatataagta gaagaaagac
181 accgtctctt cctttaagga acttacagtc ttatggaaga gacacagatg gaagtgcaca
241 attaccgaat atcatcaaaa agcctgagaa aaagttatgc aaaagctact gtgtgagcac
301 agaggctgta aacctaatcc taagttgcag ggtgagcaac aaggcactat tttggaagca
361 gagaacagcc ctcaccagac acggaatctg ctggtgccct gatcttggaa ttcccaccgt
421 ctagaactgt gcaagttctc tcctgttgcc ctgagtgccc actcccaggc cctctgtatg
481 agtgacactt cagtctgcca tggaacctgg ccctgctctg gcctggctcc tgctcctgag
541 cctgctggcg gattgtctga aagctgctca gtcccgagac ttcacagtga aagacattat
601 ctacctccat ccttcaacca caccatatcc tggtggattt aaatgtttca cctgtgaaaa
661 ggcagcagac aattatgagt gcaaccgatg ggctccagac atctactgcc ctcgaggaac
721 catgatctag aagaaaagcc agatatccca aatgagaaag ttaagaagga ctaagacaac
781 atggagaaga gagaagatta gcattgacct ggttgggagg aagatcagga agatttcaca
841 gaatttatca catttggatt gagccttgaa gaatatcagg tgtccaggag tagaagatag
901 gaaaaaatat gcagaccatg ctaaggatgc acatttttca tcgtgcatgg tcaaaagttg
961 tggtactatg tctcaaggta tatacgaggc aatgaggaga cagtttggag cctccatcaa
1021 ggagaaccag accagatact gctacactca gcacacaatg gaagtcacag gaaacagtat
1081 ctcagtcacc aaacgctgtg tcccactgga agagtgctta tccactggct gcagagactc
1141 cgagcatgaa ggccacaagg tctgcacttc ttgttgtgaa ggaaatatct gtaacttgcc
1201 actgccccga aatgaaactg atgccacatt tgccacgacg tcacctataa atcagacaaa
1261 tgggcaccca cgctgtatgt cagtgatagt gtcctgcttg tggttgtggt tagggctcat
1321 gttatagtgg ctcagtggct ccatgtgtta atagcgatcc atggggatct cgatggtcca
1381 cagacctgca tgagtcattg gcctgacagt aattacacat gtgagacaca acactcttgg
1441 aggtcatcac agccaagcat tgccacttac catgaggaat aaatgttgct tcattgtagc
1501 cattttgagt ctaaccgaga ctcatcaaag ccttctgtca gtacagccca agttccatac
1561 cataaacgtt tgttttcatt ccaaaaaaaa aaaaaaaa
//