LOCUS BC032782 483 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens split hand/foot malformation (ectrodactyly) type 1,
mRNA (cDNA clone MGC:45216 IMAGE:5166837), complete cds.
ACCESSION BC032782
VERSION BC032782.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 483)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 483)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: i Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5453639.
FEATURES Location/Qualifiers
source 1..483
/db_xref="H-InvDB:HIT000041717"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45216 IMAGE:5166837"
/tissue_type="Brain, adult medulla"
/clone_lib="NIH_MGC_119"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..483
/gene="SHFM1"
/gene_synonym="DSS1"
/gene_synonym="ECD"
/gene_synonym="SEM1"
/gene_synonym="Shfdg1"
/gene_synonym="SHSF1"
/db_xref="GeneID:7979"
/db_xref="HGNC:HGNC:10845"
/db_xref="MIM:183600"
CDS 89..301
/gene="SHFM1"
/gene_synonym="DSS1"
/gene_synonym="ECD"
/gene_synonym="SEM1"
/gene_synonym="Shfdg1"
/gene_synonym="SHSF1"
/codon_start=1
/product="split hand/foot malformation (ectrodactyly) type
1"
/protein_id="AAH32782.1"
/db_xref="GeneID:7979"
/db_xref="HGNC:HGNC:10845"
/db_xref="MIM:183600"
/translation="MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWD
DDNVEDDFSNQLRAELEKHGYKMETS"
BASE COUNT 165 a 67 c 127 g 124 t
ORIGIN
1 gcggtagtga cggtggcgtt tccttgagga agagtgaggg ttccaacttt tctgcttatc
61 tgggaggtgt tgggcgcgga cagtcgagat gtcagagaaa aagcagccgg tagacttagg
121 tctgttagag gaagacgacg agtttgaaga gttccctgcc gaagactggg ctggcttaga
181 tgaagatgaa gatgcacatg tctgggagga taattgggat gatgacaatg tagaggatga
241 cttctctaat cagttacgag ctgaactaga gaaacatggt tataagatgg agacttcata
301 gcatccagaa gaagtgttga agtaacctaa acttgacctg cttaatacat tctagggcag
361 agaacccagg atgggacact aaaaaaatgt gtttatttca ttatctgctt ggatttattt
421 gtgtttttgt aacacaaaaa ataaatgttt tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa
481 aaa
//