LOCUS BC032769 938 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens homeobox C9, mRNA (cDNA clone IMAGE:3877189), partial
cds.
ACCESSION BC032769
VERSION BC032769.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 938)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 938)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 68 Row: c Column: 5.
FEATURES Location/Qualifiers
source 1..938
/db_xref="H-InvDB:HIT000092799"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3877189"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_68"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..938
/gene="HOXC9"
/db_xref="GeneID:3225"
/db_xref="HGNC:HGNC:5130"
/db_xref="IMGT/GENE-DB:5130"
/db_xref="MIM:142971"
CDS <1..792
/gene="HOXC9"
/codon_start=1
/product="HOXC9 protein"
/protein_id="AAH32769.1"
/db_xref="GeneID:3225"
/db_xref="HGNC:HGNC:5130"
/db_xref="IMGT/GENE-DB:5130"
/db_xref="MIM:142971"
/translation="PRVRSATGPISNYYVDSLISHDNEDLLASRFPATGAHPAAARPS
GLVPDCSDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEP
LSGAVSFPSFPAGGRHYALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTL
PSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFNM
YLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS"
BASE COUNT 233 a 313 c 258 g 134 t
ORIGIN
1 ccacgcgtcc ggtcggcgac ggggcccatc agtaactatt acgtggactc gctcatctct
61 cacgacaatg aagacctcct agcgtccagg tttccggcca ccggggctca tcccgccgcc
121 gccagaccca gcggtttggt gccggactgt agcgattttc cgtcctgtag cttcgcgccc
181 aagccggcag tgttcagcac gtcgtgggcg cccgtgccct ctcagtcgtc cgtggtatat
241 cacccgtacg gcccccagcc ccacctcggc gccgacacgc gctacatgcg gacttggctc
301 gagccgctgt ccggcgccgt ctccttcccc agcttcccgg ccgggggccg tcactacgcc
361 ctcaagccgg acgcctaccc cgggcgccgc gcggactgcg gcccagggga gggccgcagc
421 tacccggact acatgtacgg ctcgcccggg gagctgcgcg accgcgcccc gcagacactg
481 ccctcgcccg aggcggacgc gctcgccggc agcaagcaca aagaggagaa ggccgacctg
541 gaccccagca accccgtggc caactggatt cacgcccgct ccacgaggaa gaagcgctgc
601 ccctacacca agtaccagac gctggaactg gagaaggagt ttctcttcaa tatgtattta
661 accagggacc gtcggtatga ggtggcccgg gttctcaatc tcaccgagcg gcaggtcaaa
721 atctggtttc agaatcgaag gatgaagatg aaaaagatga ataaagagaa aaccgacaag
781 gagcagtcct aaaccctacc cagcctgctg cctcagcaca gccaagggaa aaacaaaaac
841 cccacaaaat accccaacac aggcggggga gagacgaaaa agaaaaggaa agagcaagat
901 agacaaaagc caatcagctt aaaaaaaaaa aaaaaaaa
//