LOCUS BC032708 4683 bp mRNA linear HUM 07-OCT-2003
DEFINITION Homo sapiens transducin (beta)-like 1X-linked, mRNA (cDNA clone
MGC:45225 IMAGE:5496758), complete cds.
ACCESSION BC032708
VERSION BC032708.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4683)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4683)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: f Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19913359.
FEATURES Location/Qualifiers
source 1..4683
/db_xref="H-InvDB:HIT000041683"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45225 IMAGE:5496758"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_85"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4683
/gene="TBL1X"
/gene_synonym="EBI"
/gene_synonym="TBL1"
/db_xref="GeneID:6907"
/db_xref="MIM:300196"
CDS 488..2068
/gene="TBL1X"
/gene_synonym="EBI"
/gene_synonym="TBL1"
/codon_start=1
/product="TBL1X protein"
/protein_id="AAH32708.1"
/db_xref="GeneID:6907"
/db_xref="MIM:300196"
/translation="MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLV
PPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREK
LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNREATVNGEENRAHSVNNHAKP
MEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGS
TQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQ
HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTF
ASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQ
EVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTL
TKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEVCWNARGD
KVGASASDGSVCVLDLRK"
misc_feature 494..595
/gene="TBL1X"
/gene_synonym="EBI"
/gene_synonym="TBL1"
/note="LisH; Region: Lissencephaly type-1-like homology
motif"
/db_xref="CDD:smart00667"
misc_feature 977..2065
/gene="TBL1X"
/gene_synonym="EBI"
/gene_synonym="TBL1"
/note="COG2319; Region: FOG: WD40 repeat [General function
prediction only]"
/db_xref="CDD:COG2319"
BASE COUNT 1198 a 1152 c 1210 g 1123 t
ORIGIN
1 ccacgcgtcc gcccagggag cccaggagca acgaagggca ggctcaaggg aaggccccac
61 catgtccttc tggggggcct tgaatggcaa ctgatacata ataagacaca atctattctg
121 ctgattcaca attatggaga ctgtatttcc gtgagggtgg aagaaaatca taccatatca
181 gatgcctcgc agagcaccag gcccaccgtg aaagctcctg gcaaccacta ttccactccc
241 tgcttctttg aatttcacaa cttgaggtag cttgtgtaag tggaattatt ttaaaagctg
301 gttcatgtta aagtgcttag aacagagctt ggtgagcatc cggtcaacag ctggtccctg
361 cagacggctt cccattttta tgaccggatg ctgggaagcc tgctggtcca caggtccata
421 catgaagtca ccataagagg gtggttccca cttcatcaac acctcatcgc cgcgaggtga
481 ggctaagatg agcataacca gtgacgaggt gaactttctg gtgtatcggt atctccagga
541 gtcaggtttt tcccactcgg ctttcacgtt tgggattgag agccacatca gccagtccaa
601 catcaatggg acgctagtgc caccggccgc cctcatctcc attctccaga agggcctgca
661 gtatgtagag gccgagatca gtatcaacga ggatggcaca gtgttcgacg gccgccccat
721 agagtccctg tcactgatag acgccgtgat gcccgacgtg gtgcagacgc ggcagcaggc
781 attccgagag aagctcgctc agcagcaagc cagtgcggcg gcggcggcgg ctgcggccac
841 ggcagcagcg acagcagcca ccacgacctc agccggcgtt tcccaccaaa atccatcgaa
901 gaacagagag gccacggtga atggggaaga gaacagagca cattcagtca ataatcacgc
961 gaagccaatg gaaatagatg gagaggttga gattccatcc agcaaagcca cagtccttcg
1021 gggccatgag tctgaggtgt tcatttgtgc ctggaatcct gtcagtgatt tgctagcctc
1081 cggatccgga gactcaactg caaggatatg gaacctgaat gagaatagca acgggggctc
1141 cacccagctc gtgttgaggc actgtatacg agaggggggc catgacgtcc cgagtaacaa
1201 agacgtcacc tcactggact ggaataccaa tggaacactc ttggctacgg gttcatatga
1261 cggttttgca agaatatgga cggaagatgg taacctggcc agcaccttag gccagcataa
1321 aggccccatc tttgccttga aatggaaccg aaaggggaat tacattttga gtgctggtgt
1381 agacaaaaca acaataattt gggatgccca cacaggagaa gccaaacagc agtttccttt
1441 tcattcagcc cctgcccttg atgtggactg gcagaacaac acgacctttg cctcctgtag
1501 cacagacatg tgtatccatg tgtgcaggct cggctgtgac cgcccagtca aaaccttcca
1561 gggacacaca aacgaggtca acgccatcaa atgggatccg tctggaatgt tgctggcatc
1621 ctgctcggat gacatgacat tgaagatctg gagcatgaaa caggaggtgt gcatccatga
1681 tcttcaggct cacaataaag agatctacac catcaagtgg agccccactg ggcccgccac
1741 cagcaaccca aactccaaca tcatgttggc aagtgcttcg tttgattcta cggtgcgact
1801 gtgggacata gaacgaggcg tctgcaccca cacgctcacg aagcatcagg agcctgtcta
1861 tagcgtagct ttcagccctg atgggaagta cttggccagt ggatccttcg acaagtgcgt
1921 ccatatctgg aatactcaga gtggaaatct tgtccacagc taccgaggca ctggcggcat
1981 cttcgaggtg tgctggaacg cccgaggaga caaagtgggt gccagcgcgt ccgacggctc
2041 tgtgtgtgtt ttggatctgc ggaagtaacc acaaaatatt atcgaaaaaa gaaaagaatt
2101 ctaatgacca gccgtgaatg tgtagggttg cagctctatt ctccaaaact gtaggaactt
2161 gacttgcgtt agagtgtact ctgaaaccaa ctcgtctctg gccgcaggag tctatatgtt
2221 ttcgtaatct tcatcaagaa gtttttaaaa ggcaagcaaa aacagaagca aatcatatca
2281 aacggggata gaatggtttc cactgaggac attcagcctg ggaaggagga agtcaccagc
2341 tcgaggcgtg tggattggtt tccacccgga acaggctctg tgatggctga atggaaagaa
2401 acgtaaaaag ctgtgccaaa aaaaaagcaa aatgctgtga taaaccaaac agggaagggg
2461 gaaaaaccct cctccttggg attttttttt ttgttttccc taacaatttg gacactacga
2521 ttgctctcac aaaggaggtt caaagaccag tttgtaccga tgaaacgcgc aactttgtaa
2581 tcccaacact ttctattttc tagaatcttc tttgttcatt gggtggtttt tcagtcggct
2641 ggaattctat cttctggggg ccttccgtct gagatggaag ctgtcttggg cttgttgtct
2701 cttccttctg ttgctccctg cccctccccc tgcctttcca ctctgtctgg tgagctctgc
2761 tttttcagtg caccatcaag agatgcagcc ccgtggacat gaagacacaa tctcccacgg
2821 acagctttcc cccttccgcc ctctcccacc ctctcctccc cttgcgctcg cgctcgcgct
2881 cgctttctca ctggcgtgct ctctttctct ctctctctcc ctctgtacct ttctcatagt
2941 tgcttcagat cttaggtctc aagggcactt tggcgcgtag taagtgcttt atgtaagaag
3001 gcagggcagg ggggcttttt acaggagaaa aaaaaatgac ttataagaga aagagcctgg
3061 agtatttttg gaaaaaaaaa taatattttt atgttaaaac aattttaaaa tcttaaaatg
3121 gccatcagac atagagagct ttgtgtgatt catgttttaa aaagaaccga agaagccaca
3181 ggcagggcct gagggagccc ctggctttcc cctcagcctc aggaaaggtg gtcaggaaaa
3241 ctctggctgg acaagggtca gtcttcgggg tcagcagcga gattgctctg cagccagtga
3301 gggaggtccc cgccatgccg gctggaagaa gaacctcgca tcttttggtg tgtatgcacc
3361 ttggcagcca gcaggaaagc agcgaagagc cgcgcgccct ctggcctcaa gggagcattg
3421 gcagaaccat aaggtactgc agaagccgtc gaaaccgact gctcggctgg attaggcgtg
3481 ttggctatat ctttcccaca accgtataac gaccgatggt catttctcca agagcaggct
3541 tggcgagtcc ttgcagagct gacatagagg cgcccgcatg tcacttagtc taacgctgac
3601 agaaatgaat gcagaaggaa gattttcagt cctgaacgtg aattatagag gtagaacgtc
3661 gctaataatt tctgccatct ttataatttc tttgtctcac agaagactag gagaaagatc
3721 ttttttaaat aatctttttg ctgtttttaa aaaattaaac aaggctttgt gttcctagaa
3781 gagcttcatt tcagtgaatc tggtgacctc catctgcttg ctgtcataac ccgacacgga
3841 cttatttttg tcattagcaa gggggaaaag gccaaaggac aagggcctct tctcccattg
3901 gttttcctgt gggcagaagg gctgaggaag atggcccagc ccgtgggggc tgctgggtca
3961 ccagcagcgg gtagggtgca atctggtgtg tgttccagca gtgagacggt gttattgtga
4021 aggtggcatt catctgcgga gccaaaaccc agccatcggg gaagggtcag ggcttctgtg
4081 gaacttggaa cgtgccagga ccacctgcaa aagccagggt gcgttgatca ttctcagatc
4141 attgattggc ctccacttgg gtatgtgaat tattcatgtc ccagaagacc aaaaagtgct
4201 ctggttctga gatgagtatt ttattcgtgt tctgtttccg aaacacttag caaagaaggt
4261 cacagtgatg tggagtcgcc gcacccatct ttgaagatag ccagtgtccc tggatgaggt
4321 gatgatttcc cgtcccaagg actctgtgaa gtttagagta cagtttgctg gggtccaaaa
4381 gacaccatct ctaccccacc caaataaaaa tgcactcatc tctgtagaac atctgctgtc
4441 aaaggccagc ctgtcgttag gacatggctt atgcttgaca aaccagtaac aactgtggga
4501 tggcgatggt gggatgtgtc gcaagcaatt cactagacaa tcttcacatg aatgtcggta
4561 gccagggtct ctcccgaggg atggctttag tcttgatgaa tgtgaaccat gtcggaattg
4621 ttaggtagaa acctgggctg ggaggcctcg gaccccaggc tccatccctg gcttccccag
4681 cct
//