LOCUS BC032708 4683 bp mRNA linear HUM 07-OCT-2003 DEFINITION Homo sapiens transducin (beta)-like 1X-linked, mRNA (cDNA clone MGC:45225 IMAGE:5496758), complete cds. ACCESSION BC032708 VERSION BC032708.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4683) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4683) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 69 Row: f Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 19913359. FEATURES Location/Qualifiers source 1..4683 /db_xref="H-InvDB:HIT000041683" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:45225 IMAGE:5496758" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_85" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..4683 /gene="TBL1X" /gene_synonym="EBI" /gene_synonym="TBL1" /db_xref="GeneID:6907" /db_xref="MIM:300196" CDS 488..2068 /gene="TBL1X" /gene_synonym="EBI" /gene_synonym="TBL1" /codon_start=1 /product="TBL1X protein" /protein_id="AAH32708.1" /db_xref="GeneID:6907" /db_xref="MIM:300196" /translation="MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLV PPAALISILQKGLQYVEAEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREK LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKNREATVNGEENRAHSVNNHAKP MEIDGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGS TQLVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTLGQ HKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTF ASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQ EVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTL TKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTGGIFEVCWNARGD KVGASASDGSVCVLDLRK" misc_feature 494..595 /gene="TBL1X" /gene_synonym="EBI" /gene_synonym="TBL1" /note="LisH; Region: Lissencephaly type-1-like homology motif" /db_xref="CDD:smart00667" misc_feature 977..2065 /gene="TBL1X" /gene_synonym="EBI" /gene_synonym="TBL1" /note="COG2319; Region: FOG: WD40 repeat [General function prediction only]" /db_xref="CDD:COG2319" BASE COUNT 1198 a 1152 c 1210 g 1123 t ORIGIN 1 ccacgcgtcc gcccagggag cccaggagca acgaagggca ggctcaaggg aaggccccac 61 catgtccttc tggggggcct tgaatggcaa ctgatacata ataagacaca atctattctg 121 ctgattcaca attatggaga ctgtatttcc gtgagggtgg aagaaaatca taccatatca 181 gatgcctcgc agagcaccag gcccaccgtg aaagctcctg gcaaccacta ttccactccc 241 tgcttctttg aatttcacaa cttgaggtag cttgtgtaag tggaattatt ttaaaagctg 301 gttcatgtta aagtgcttag aacagagctt ggtgagcatc cggtcaacag ctggtccctg 361 cagacggctt cccattttta tgaccggatg ctgggaagcc tgctggtcca caggtccata 421 catgaagtca ccataagagg gtggttccca cttcatcaac acctcatcgc cgcgaggtga 481 ggctaagatg agcataacca gtgacgaggt gaactttctg gtgtatcggt atctccagga 541 gtcaggtttt tcccactcgg ctttcacgtt tgggattgag agccacatca gccagtccaa 601 catcaatggg acgctagtgc caccggccgc cctcatctcc attctccaga agggcctgca 661 gtatgtagag gccgagatca gtatcaacga ggatggcaca gtgttcgacg gccgccccat 721 agagtccctg tcactgatag acgccgtgat gcccgacgtg gtgcagacgc ggcagcaggc 781 attccgagag aagctcgctc agcagcaagc cagtgcggcg gcggcggcgg ctgcggccac 841 ggcagcagcg acagcagcca ccacgacctc agccggcgtt tcccaccaaa atccatcgaa 901 gaacagagag gccacggtga atggggaaga gaacagagca cattcagtca ataatcacgc 961 gaagccaatg gaaatagatg gagaggttga gattccatcc agcaaagcca cagtccttcg 1021 gggccatgag tctgaggtgt tcatttgtgc ctggaatcct gtcagtgatt tgctagcctc 1081 cggatccgga gactcaactg caaggatatg gaacctgaat gagaatagca acgggggctc 1141 cacccagctc gtgttgaggc actgtatacg agaggggggc catgacgtcc cgagtaacaa 1201 agacgtcacc tcactggact ggaataccaa tggaacactc ttggctacgg gttcatatga 1261 cggttttgca agaatatgga cggaagatgg taacctggcc agcaccttag gccagcataa 1321 aggccccatc tttgccttga aatggaaccg aaaggggaat tacattttga gtgctggtgt 1381 agacaaaaca acaataattt gggatgccca cacaggagaa gccaaacagc agtttccttt 1441 tcattcagcc cctgcccttg atgtggactg gcagaacaac acgacctttg cctcctgtag 1501 cacagacatg tgtatccatg tgtgcaggct cggctgtgac cgcccagtca aaaccttcca 1561 gggacacaca aacgaggtca acgccatcaa atgggatccg tctggaatgt tgctggcatc 1621 ctgctcggat gacatgacat tgaagatctg gagcatgaaa caggaggtgt gcatccatga 1681 tcttcaggct cacaataaag agatctacac catcaagtgg agccccactg ggcccgccac 1741 cagcaaccca aactccaaca tcatgttggc aagtgcttcg tttgattcta cggtgcgact 1801 gtgggacata gaacgaggcg tctgcaccca cacgctcacg aagcatcagg agcctgtcta 1861 tagcgtagct ttcagccctg atgggaagta cttggccagt ggatccttcg acaagtgcgt 1921 ccatatctgg aatactcaga gtggaaatct tgtccacagc taccgaggca ctggcggcat 1981 cttcgaggtg tgctggaacg cccgaggaga caaagtgggt gccagcgcgt ccgacggctc 2041 tgtgtgtgtt ttggatctgc ggaagtaacc acaaaatatt atcgaaaaaa gaaaagaatt 2101 ctaatgacca gccgtgaatg tgtagggttg cagctctatt ctccaaaact gtaggaactt 2161 gacttgcgtt agagtgtact ctgaaaccaa ctcgtctctg gccgcaggag tctatatgtt 2221 ttcgtaatct tcatcaagaa gtttttaaaa ggcaagcaaa aacagaagca aatcatatca 2281 aacggggata gaatggtttc cactgaggac attcagcctg ggaaggagga agtcaccagc 2341 tcgaggcgtg tggattggtt tccacccgga acaggctctg tgatggctga atggaaagaa 2401 acgtaaaaag ctgtgccaaa aaaaaagcaa aatgctgtga taaaccaaac agggaagggg 2461 gaaaaaccct cctccttggg attttttttt ttgttttccc taacaatttg gacactacga 2521 ttgctctcac aaaggaggtt caaagaccag tttgtaccga tgaaacgcgc aactttgtaa 2581 tcccaacact ttctattttc tagaatcttc tttgttcatt gggtggtttt tcagtcggct 2641 ggaattctat cttctggggg ccttccgtct gagatggaag ctgtcttggg cttgttgtct 2701 cttccttctg ttgctccctg cccctccccc tgcctttcca ctctgtctgg tgagctctgc 2761 tttttcagtg caccatcaag agatgcagcc ccgtggacat gaagacacaa tctcccacgg 2821 acagctttcc cccttccgcc ctctcccacc ctctcctccc cttgcgctcg cgctcgcgct 2881 cgctttctca ctggcgtgct ctctttctct ctctctctcc ctctgtacct ttctcatagt 2941 tgcttcagat cttaggtctc aagggcactt tggcgcgtag taagtgcttt atgtaagaag 3001 gcagggcagg ggggcttttt acaggagaaa aaaaaatgac ttataagaga aagagcctgg 3061 agtatttttg gaaaaaaaaa taatattttt atgttaaaac aattttaaaa tcttaaaatg 3121 gccatcagac atagagagct ttgtgtgatt catgttttaa aaagaaccga agaagccaca 3181 ggcagggcct gagggagccc ctggctttcc cctcagcctc aggaaaggtg gtcaggaaaa 3241 ctctggctgg acaagggtca gtcttcgggg tcagcagcga gattgctctg cagccagtga 3301 gggaggtccc cgccatgccg gctggaagaa gaacctcgca tcttttggtg tgtatgcacc 3361 ttggcagcca gcaggaaagc agcgaagagc cgcgcgccct ctggcctcaa gggagcattg 3421 gcagaaccat aaggtactgc agaagccgtc gaaaccgact gctcggctgg attaggcgtg 3481 ttggctatat ctttcccaca accgtataac gaccgatggt catttctcca agagcaggct 3541 tggcgagtcc ttgcagagct gacatagagg cgcccgcatg tcacttagtc taacgctgac 3601 agaaatgaat gcagaaggaa gattttcagt cctgaacgtg aattatagag gtagaacgtc 3661 gctaataatt tctgccatct ttataatttc tttgtctcac agaagactag gagaaagatc 3721 ttttttaaat aatctttttg ctgtttttaa aaaattaaac aaggctttgt gttcctagaa 3781 gagcttcatt tcagtgaatc tggtgacctc catctgcttg ctgtcataac ccgacacgga 3841 cttatttttg tcattagcaa gggggaaaag gccaaaggac aagggcctct tctcccattg 3901 gttttcctgt gggcagaagg gctgaggaag atggcccagc ccgtgggggc tgctgggtca 3961 ccagcagcgg gtagggtgca atctggtgtg tgttccagca gtgagacggt gttattgtga 4021 aggtggcatt catctgcgga gccaaaaccc agccatcggg gaagggtcag ggcttctgtg 4081 gaacttggaa cgtgccagga ccacctgcaa aagccagggt gcgttgatca ttctcagatc 4141 attgattggc ctccacttgg gtatgtgaat tattcatgtc ccagaagacc aaaaagtgct 4201 ctggttctga gatgagtatt ttattcgtgt tctgtttccg aaacacttag caaagaaggt 4261 cacagtgatg tggagtcgcc gcacccatct ttgaagatag ccagtgtccc tggatgaggt 4321 gatgatttcc cgtcccaagg actctgtgaa gtttagagta cagtttgctg gggtccaaaa 4381 gacaccatct ctaccccacc caaataaaaa tgcactcatc tctgtagaac atctgctgtc 4441 aaaggccagc ctgtcgttag gacatggctt atgcttgaca aaccagtaac aactgtggga 4501 tggcgatggt gggatgtgtc gcaagcaatt cactagacaa tcttcacatg aatgtcggta 4561 gccagggtct ctcccgaggg atggctttag tcttgatgaa tgtgaaccat gtcggaattg 4621 ttaggtagaa acctgggctg ggaggcctcg gaccccaggc tccatccctg gcttccccag 4681 cct //