LOCUS BC032680 4769 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens zinc finger, FYVE domain containing 9, mRNA (cDNA
clone MGC:45259 IMAGE:5585817), complete cds.
ACCESSION BC032680
VERSION BC032680.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4769)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4769)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: p Column: 5.
FEATURES Location/Qualifiers
source 1..4769
/db_xref="H-InvDB:HIT000041666"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45259 IMAGE:5585817"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4769
/gene="ZFYVE9"
/gene_synonym="NSP"
/gene_synonym="SARA"
/gene_synonym="SMADIP"
/db_xref="GeneID:9372"
/db_xref="HGNC:HGNC:6775"
/db_xref="MIM:603755"
CDS 12..4289
/gene="ZFYVE9"
/gene_synonym="NSP"
/gene_synonym="SARA"
/gene_synonym="SMADIP"
/codon_start=1
/product="zinc finger, FYVE domain containing 9"
/protein_id="AAH32680.1"
/db_xref="GeneID:9372"
/db_xref="HGNC:HGNC:6775"
/db_xref="MIM:603755"
/translation="MENYFQAEAYNLDKVLDEFEQNEDETVSSTLLDTKWNKILDPPS
HRLSFNPTLASVNESAVSNESQPQLKVFSLAHSAPLTTEEEDHCANGQDCNLNPEIAT
MWIDENAVAEDQLIKRNYSWDDQCSAVEVGEKKCGNLACLPDEKNVLVVAVMHNCDKR
TLQNDLQDCNNYNSQSLMDAFSCSLDNENRQTDQFSFSINESTEKDMNSEKQMDPLNR
PKTEGRSVNHLCPTSSDSLASVCSPSQLKDDGSIGRDPSMSAITSLTVDSVISSQGTD
GCPAVKKQENYIPDEDLTGKISSPRTDLGSPNSFSHMSEGILMKKEPAEESTTEESLR
SGLPLLLKPDMPNGSGRNNDCERCSDCLVPNEVRADENEGYEHEETLGTTEFLNMTEH
FSESQDMTNWKLTKLNEMNDSQVNEEKEKFLQISQPEDTNGDSGGQCVGLADAGLDLK
GTCISESEECDFSTVIDTPAANYLSNGCDSYGMQDPGVSFVPKTLPSKEDSVTEEKEI
EESKSECYSNIYEQRGNEATEGSGLLLNSTGDLMKKNYLHNFCSQVPSVLGQSSPKVV
ASLPSISVPFGGARPKQPSNLKLQIPKPLSDHLQNDFPANSGNNTKNKNDILGKAKLG
ENSATNVCSPSLGNISNVDTNGEHLESYEAEISTRPCLALAPDSPDNDLRAGQFGISA
RKPFTTLGEVAPVWVPDSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLL
YMDRKEARVCVICHSVLMNAQAWENMMSASSQSPNPNNPAEYCSTIPPLQQAQASGAL
SSPPPTVMVPVGVLKHPGAEVAQPREQRRVWFADGILPNGEVADAAKLTMNGTSSAGT
LAVSHDPVKPVTTSPLPAETDICLFSGSITQVGSPVGSAMNLIPEDGLPPILISTGVK
GDYAVEEKPSQISVMQQLEDGGPDPLVFVLNANLLSMVKIVNYVNRKCWCFTTKGMHA
VGQSEIVILLQCLPDEKCLPKDIFNHFVQLYRDALAGNVVSNLGHSFFSQSFLGSKEH
GGFLYVTSTYQSLQDLVLPTPPYLFGILIQKWETPWAKVFPIRLMLRLGAEYRLYPCP
LFSVRFRKPLFGETGHTIMNLLADFRNYQYTLPVVQGLVVDMEVRKTSIKIPSNRYNE
MMKAMNKSNEHVLAGGACFNEKADSHLVCVQNDDGNYQTQAISIHNQPRKVTGASFFV
FSGALKSSSGYLAKSSIVEDGVMVQITAENMDSLRQALREMKDFTITCGKADAEEPQE
HIHIQWVDDDKNVSKGVVSPIDGKSMETITNVKIFHGSEYKANGKVIRWTEVFFLEND
DQHNCLSDPADHSRLTEHVAKAFCLALCPHLKLLKEDGMTKLGLRVTLDSDQVGYQAG
SNGQPLPSQYMNDLDSALVPVIHGGACQLSEGPVVMELIFYILENIV"
BASE COUNT 1441 a 955 c 1114 g 1259 t
ORIGIN
1 ccacgcgtcc gatggagaat tacttccaag cagaagctta caacctggac aaggtgttag
61 atgaatttga acaaaacgaa gatgaaacag tttcttctac tttattggat acaaagtgga
121 ataagattct agatccccct tctcaccggc tgtcatttaa ccctactttg gccagtgtga
181 atgaatctgc agtttctaat gagtcacaac cacaactgaa agtcttctcc ctggctcatt
241 cagctcccct gaccacagag gaagaggatc actgtgctaa tggacaggac tgtaatctaa
301 atccagagat tgccacaatg tggattgatg aaaatgctgt tgcagaagac cagttaatta
361 agagaaacta tagttgggat gatcaatgca gtgctgttga agtgggagag aagaaatgtg
421 gaaacctggc ttgtctgcca gatgagaaga atgttcttgt tgtagccgtc atgcataact
481 gtgataaaag gacattacaa aacgatttac aggattgtaa taattataat agtcaatccc
541 ttatggatgc ttttagctgt tcactggata atgaaaacag acaaactgat caatttagtt
601 ttagtataaa tgagtccact gaaaaagata tgaattcaga gaaacaaatg gatccattga
661 atagaccgaa aacagagggg agatctgtta accatctgtg tcctacttca tctgatagtc
721 tagccagtgt ctgttcccct tcacaattaa aggatgacgg aagtataggt agagacccct
781 ccatgtctgc gattacaagt ttaacggttg attcagtaat ctcatcccag ggaacagatg
841 gatgtcctgc tgttaaaaag caagagaact atataccaga tgaggacctc actggcaaaa
901 tcagctctcc taggacagat ctagggagtc caaattcctt ttcccacatg agtgagggga
961 ttttgatgaa aaaagagcca gcagaggaga gcaccactga agaatccctc cggtctggtt
1021 tacctttgct tctcaaacca gacatgccta atgggtctgg aaggaataat gactgtgaac
1081 ggtgttcaga ttgccttgtg cctaatgaag ttagggctga tgaaaatgaa ggttatgaac
1141 atgaagaaac tcttggcact acagaattcc ttaatatgac agagcatttc tctgaatctc
1201 aggacatgac taattggaag ttgactaaac taaatgagat gaatgatagc caagtaaacg
1261 aagaaaagga aaagtttcta cagattagtc agcctgagga cactaatggt gatagtggag
1321 gacagtgtgt tggattggca gatgcaggtc tagatttaaa aggaacttgc attagtgaaa
1381 gtgaagaatg tgatttctcc actgttatag acacaccagc agcaaattat ctatctaatg
1441 gttgtgattc ctatggaatg caagacccag gtgtttcttt tgttccaaag actttaccct
1501 ccaaagaaga ttcagtaaca gaagaaaaag aaatagagga aagcaagtca gaatgctact
1561 caaatattta tgaacagaga ggaaatgagg ccacagaagg gagtggacta cttttaaaca
1621 gcactggtga cctaatgaag aaaaattatt tacataattt ctgtagtcaa gttccatcag
1681 tgcttgggca atcttccccc aaggtagtag caagcctgcc atctatcagt gttccttttg
1741 gtggtgcaag acccaagcaa ccttctaatc ttaaacttca aattccaaag ccattatcag
1801 accatttaca aaatgacttt cctgcaaaca gtggaaataa tactaaaaat aaaaatgata
1861 ttcttgggaa agcaaaatta ggggaaaact cagcaaccaa tgtatgcagt ccatctttgg
1921 gaaacatctc taatgtcgat acaaatgggg aacatttaga aagttatgag gctgagatct
1981 ccactagacc atgccttgca ttagctccag atagcccaga taatgatctc agagctggtc
2041 agtttggaat ttctgccaga aagccattca ccactctggg tgaggtggct ccagtatggg
2101 taccggattc tcaggctcca aattgcatga aatgtgaagc caggtttaca ttcaccaaaa
2161 ggaggcatca ctgcagagca tgtgggaagg ttttctgtgc ttcctgctgt agcctgaaat
2221 gtaaactgtt atacatggac agaaaggaag ctagagtgtg tgtaatctgc cattcagtgc
2281 taatgaatgc tcaagcctgg gagaacatga tgagtgcctc aagccagagc cctaacccta
2341 acaatcctgc tgaatactgt tctactatcc ctcccttgca gcaagctcag gcctcaggag
2401 ctctgagctc tccacctccc actgtgatgg tacctgtggg agttttaaag caccctggag
2461 cagaagtggc tcagcccaga gagcagaggc gagtttggtt tgctgatggg atcttgccca
2521 atggagaagt tgctgatgca gccaaattaa caatgaatgg aacttcctct gcaggaaccc
2581 tggctgtgtc acacgaccca gtcaagccag taactaccag tcctctacca gcagagacgg
2641 atatttgtct attctctggg agtataactc aggttggaag tcctgttgga agtgcaatga
2701 atcttattcc tgaagatggc cttcctccca ttctcatctc cactggtgta aaaggagact
2761 atgctgtgga agagaaacca tcacagattt cagtaatgca gcagttggag gatggtggcc
2821 ctgacccact tgtatttgtt ttaaatgcaa atttgttgtc aatggttaaa attgtaaatt
2881 atgtgaacag gaagtgctgg tgtttcacaa ccaagggaat gcatgcagtg ggtcagtctg
2941 agatagtcat tcttctacag tgtttaccgg atgaaaagtg tttgccaaag gatatcttta
3001 atcactttgt gcagctttat cgggatgctc tggcagggaa tgtggtgagc aacttgggac
3061 attccttctt cagtcaaagt ttccttggca gtaaagaaca tggtggattc ttatatgtga
3121 catctaccta ccagtcactg caagacctag tactcccaac cccaccttac ttgtttggga
3181 ttcttatcca gaaatgggaa actccttggg ctaaagtatt tcctatccgt ctgatgttga
3241 gacttggagc tgaatatcga ctttatccat gcccactatt cagtgtcaga tttcggaagc
3301 cattgtttgg agagacgggg cataccatca tgaatcttct tgcagacttc agaaattacc
3361 agtatacctt gccagtagtt caaggtttgg tggttgatat ggaagttcgg aaaactagca
3421 tcaaaattcc cagcaacaga tacaatgaga tgatgaaagc catgaacaag tccaatgagc
3481 atgtcctggc aggaggtgcc tgcttcaatg aaaaggcaga ctctcatctt gtgtgtgtac
3541 agaatgatga tggaaactat cagacccagg ctatcagtat tcacaatcag cccagaaaag
3601 tgactggtgc cagtttcttt gtgttcagtg gcgctctgaa atcctcttct ggataccttg
3661 ccaagtccag tattgtggaa gatggtgtta tggtccagat tactgcagag aacatggatt
3721 ccttgaggca ggcactgcga gagatgaagg acttcaccat cacctgtggg aaggcggacg
3781 cggaggaacc ccaggagcac atccacatcc agtgggtgga tgatgacaag aacgttagca
3841 agggtgtcgt aagtcctata gatgggaagt ccatggagac tataacaaat gtgaagatat
3901 tccatggatc agaatataaa gcaaatggaa aagtaatcag atggacagag gtgtttttcc
3961 tagaaaacga tgaccagcac aattgcctca gtgatcctgc agatcacagt agattgactg
4021 agcatgttgc caaagctttt tgccttgctc tctgtcctca cctgaaactt ctgaaggaag
4081 atggaatgac caaactggga ctacgtgtga cacttgactc agatcaggtt ggctatcaag
4141 cagggagcaa tggccagccc cttccctcgc agtacatgaa tgatctggac agcgccttgg
4201 tgccggtgat ccatggaggg gcctgccagc ttagtgaggg ccccgttgtc atggaactca
4261 tcttttatat tctggaaaac atcgtataaa cagagaagac ttcatttttt tctgttcaga
4321 cttgttgcaa cagcagtcat acccaaatca tttgcacttt aaaactggaa gattaagctt
4381 ttgttaacac tattaatggg gtggggaata gggtgggagt gggggtttgg gagacgggtg
4441 ggaaagggtg gttgggggga ccgatgttcc ataattctaa gtcttctatg cattgtccac
4501 caagaagatc tgggcagctt ctgttcctgc acaacagtta tgctatcctt gcagctaatc
4561 cccttctgtt actgtttaga caagaattcc gctcctctct caagatttac ttatggtcat
4621 gtgctcagaa atgctcaaat gggtacaacc atcaccaagg gtgggatggg agggcagagg
4681 ggaaataaaa tataaagcat cagttcttgc actctttgta cagaattggt ataaaaagga
4741 taattccaca ctgaaaaaaa aaaaaaaaa
//