LOCUS BC032643 3319 bp mRNA linear HUM 11-DEC-2003
DEFINITION Homo sapiens synaptotagmin binding, cytoplasmic RNA interacting
protein, mRNA (cDNA clone MGC:45213 IMAGE:5495201), complete cds.
ACCESSION BC032643
VERSION BC032643.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3319)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3319)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2002) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 69 Row: f Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23397426.
FEATURES Location/Qualifiers
source 1..3319
/db_xref="H-InvDB:HIT000041649"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:45213 IMAGE:5495201"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..3319
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/db_xref="GeneID:10492"
CDS 98..1681
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/codon_start=1
/product="SYNCRIP protein"
/protein_id="AAH32643.1"
/db_xref="GeneID:10492"
/translation="MATEHVNGNGTEEPMDTTSAVIHSENFQTLLDAGLPQKVAEKLD
EIYVAGLVAHSDLDERAIEALKEFNEDGALAVLQQFKDSDLSHVQNKSAFLCGVMKTY
RQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSV
GTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE
AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILY
HQPDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK
LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQM
YDDYYYYGPPHMPPPTRGRGRGGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPY
YGYEDFQVGARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQ
QQRGRGQGKGVEAGPDLLQ"
misc_feature 587..805
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 827..1003
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 1007..1201
/gene="SYNCRIP"
/gene_synonym="dJ3J17.2"
/gene_synonym="GRY-RBP"
/gene_synonym="NSAP1"
/gene_synonym="pp68"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 1055 a 569 c 712 g 983 t
ORIGIN
1 ccacgcgtcc ggggagcagc gagcacgcgt ttcccgcaac ccgataccat cggacaggat
61 ttctccgcct cagcccaacg gggagatctc tggaaacatg gctacagaac atgttaatgg
121 aaatggtact gaagagccca tggatactac ttctgcagtt atccattcag aaaattttca
181 gacattgctt gatgctggtt taccacagaa agttgctgaa aaactagatg aaatttacgt
241 tgcagggcta gttgcacata gtgatttaga tgaaagagct attgaagctt taaaagaatt
301 caatgaagac ggtgcattgg cagttcttca acagtttaaa gacagtgatc tctctcatgt
361 tcagaacaaa agtgcctttt tatgtggagt catgaagact tacaggcaga gagaaaaaca
421 agggaccaaa gtagcagatt ctagtaaagg accagatgag gcaaaaatta aggcactctt
481 ggaaagaaca ggctacacac ttgatgtgac cactggacag aggaagtatg gaggaccacc
541 tccagattcc gtttattcag gtcagcagcc ttctgttggc actgagatat ttgtgggaaa
601 gatcccaaga gatctatttg aggatgaact tgttccatta tttgagaaag ctggacctat
661 atgggatctt cgtctaatga tggatccact cactggtctc aatagaggtt atgcgtttgt
721 cactttttgt acaaaagaag cagctcagga ggctgttaaa ctgtataata atcatgaaat
781 tcgttctgga aaacatattg gtgtctgcat ctcagttgcc aacaataggc tttttgtggg
841 ctctattcct aagagtaaaa ccaaggaaca gattcttgaa gaatttagca aagtaacaga
901 gggtcttaca gacgtcattt tataccacca accggatgac aagaaaaaaa acagaggctt
961 ttgctttctt gaatatgaag atcacaaaac agctgcccag gtaaaagtgc tgtttgtacg
1021 caaccttgcc aatactgtaa cagaagagat tttagaaaag gcatttagtc agtttgggaa
1081 actggaacga gtgaagaagt taaaagatta tgcgttcatt cattttgatg agcgagatgg
1141 tgctgtcaag gctatggaag aaatgaatgg caaagacttg gagggagaaa atattgaaat
1201 tgtttttgcc aagccaccag atcagaaaag gaaagaaaga aaagctcaga ggcaagcagc
1261 aaaaaatcaa atgtatgacg attactacta ttatggtcca cctcatatgc cccctccaac
1321 aagaggtcga gggcgtggag gtagaggtgg ttatggatat cctccagatt attatggata
1381 tgaagattat tatgattatt atggttatga ttaccataac tatcgtggtg gatatgaaga
1441 tccatactat ggttatgaag attttcaagt tggagctaga ggaaggggtg gtagaggagc
1501 aaggggtgct gctccatcca gaggtcgtgg ggctgctcct ccccgcggta gagccggtta
1561 ttcacagaga ggaggtcctg gatcagcaag aggcgttcga ggtgcgagag gaggtgccca
1621 acaacaaaga ggccgcgggc agggaaaagg ggtcgaggcc ggtcctgacc tgttacaatg
1681 aagactgact tgctatgtgg gattacacca gaagcttgca gtggagtaat ggtaaggaaa
1741 tcaagcaacc ttaaatatgt cggctgtata ggagcatatt ctattgcaga agaccttcct
1801 atgaagatca tggaatcaaa tacgggacat tgaactaata cttggacttt gatatgaatt
1861 tctttaacaa ttttctctgc agtgcaagtt attaaactaa agctactcta ttttcaaaat
1921 gtgttccaac agaaatcctt cataactcct agcatggtat cttaataaag aataaagttc
1981 ttttaaaaat ctgctctaag tagatttttc ccctttttta aattaaggat cccaacagtg
2041 gtattttgaa atattctctt gaatttgtgc atttaaattt tattgcagtg gtatagatga
2101 atgccactga tggtatcctt aaattttatt tctgctcacc aaggttaatc atgattgtct
2161 atatcttttt tatagtgatc acttttgaat tgtgttcaga tatgcagttt caggtgtaat
2221 catcagagct ggttagtcag gcattccaga tagtggttct tttcagaacc tttttaaaag
2281 ggttggttaa ctacctcagt agcagaggat tgaactatac cctgtctgta ctgtacatag
2341 aaaatctttg tagataaaag caaggcttgt taaatatgat atgagggtaa gattttaata
2401 taccaaatgt aacattctta gttgccttta gtttcagagg cttgtaagac ttcctcatga
2461 ccatcataac aggccttgct tttgtcgtat tttgtggctg aaaaagcagc cttgcttctt
2521 cagatattgt agttatttgg atgtataata gtttagcaag atgttacttt tgtaagacat
2581 cagatgttca aaaaagtgca tccgaacttg tactaaatac tgcagtgtcc ctttataaaa
2641 agtcagacta aaactgacaa ttgtacagcg aagcctgaca tttggatatt ttgaagtttt
2701 ttcataaatc atagaaatta gtatatggct gtagtttagc tttttaggta aaaggtatgt
2761 ttcattagtg catttcttcc tgctgatcac tgtaaacatg tgaatcagct ttccatttct
2821 tatgcaggtc atgataactt gtagagtaga gtacaatcat ttgtgctatg tttttaattt
2881 tctaaagcac cttgatgaca gtgagtgtcc agtggtgaag catcctctat tgaaccaccc
2941 tcaaaaattt ttttgccaag tcctaagttg atagcttaaa gtaaaaagtg aaaattatag
3001 tttcattagg acttggtgta aagaaatccc ctcccccctt ccccaaaggg atactgcagt
3061 tatatcacat acccaatagg caccacgatg aagatcagag cttatactta attaaggttt
3121 tatacacacc agttccccag taaatgcaaa tttaacaaga aaatcagaca tgtcatatgt
3181 tcaaaatgct catggcaaac aatcattttg cattcctgca aataaaattg ttttatactg
3241 taagctggag gcgagtgtaa cttatttttg taataaagtt tttatttttt tttaaaaaaa
3301 aaaaaaaaaa aaaaaaaaa
//